Detail information of GWHGAAEX005369/evm.TU.scaffold_161.80
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3465 | 4.00E-52 | Signal recognition particle, subunit Srp9 |
| nr | gi|242095386|ref|XP_002438183.1| | 1.23E-55 | hypothetical protein SORBIDRAFT_10g009280 [Sorghum bicolor] |
| Swissprot | tr|O04438|SRP09_MAIZE | 3.00E-56 | Signal recognition particle 9 kDa protein |
| trEMBL | tr|C5Z809|C5Z809_SORBI | 5.00E-56 | Signal recognition particle 9 kDa protein {ECO:0000256|PIRNR:PIRNR017029} |
| TAIR | AT3G49100 | 4.00E-52 | Signal recognition particle, SRP9/SRP14 subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000166 | 2275164 | 2290165 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005369
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05486.11 | SRP9-21 | 5 | 65 | 1.80E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03109 | SRP9 | Protein export | map03060 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006614 | Biological Process | SRP-dependent cotranslational protein targeting to membrane |
| GO:0008312 | Molecular Function | 7S RNA binding |
| GO:0048500 | Cellular Component | signal recognition particle |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.920 |
| SRR2545915 | Juvenile tuber | 32.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 59.260 |
| SRR5643514 | five period of Gastrodia elata | 65.050 | |
| SRR5643515 | five period of Gastrodia elata | 64.830 | |
| SRR5643524 | five period of Gastrodia elata | 68.230 | |
| SRR5643525 | five period of Gastrodia elata | 43.470 | |
| SRR5643528 | five period of Gastrodia elata | 50.180 | |
| SRR5643658 | five period of Gastrodia elata | 46.500 | |
| SRR5643659 | five period of Gastrodia elata | 35.660 | |
| SRR5643660 | five period of Gastrodia elata | 40.110 | |
| SRR5643661 | five period of Gastrodia elata | 39.000 | |
| SRR5643662 | five period of Gastrodia elata | 34.330 | |
| SRR5643663 | five period of Gastrodia elata | 33.040 | |
| SRR5643664 | five period of Gastrodia elata | 40.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 34.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 62.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 62.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.94 |
| Juven | Juvenile tuber | 58.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 58.87 | |
| Mother_Juven | Mother tuber of Juvenile | 52.14 |