Gene detail

Detail information of GWHGAAEX005370/evm.TU.scaffold_161.81

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743881006\|ref\|XP_010908790.1\|	PREDICTED: nuclear pore complex protein NUP133 isoform X2 [Elaeis guineensis]
Swissprot	tr\|F4IGA5\|NU133_ARATH	Nuclear pore complex protein NUP133 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|M0TCU7\|M0TCU7_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P35040_001}
TAIR	AT2G05120	Nucleoporin, Nup133/Nup155-like

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000166	2290272	2295378	+

Transcript Sequence
>GWHTAAEX005370 TTGAATATTATGTCGATGATCATATGCACAATTTATATGCATCATCAAAAATAAATTTGCTTTTCTATTTTTTTATATATATTTGAAATAAAAAATAAATTACACTAATCATAATTGCAGATACTAAAACTCCATTTATTTATTTATTTAATTATGAGGTCGAGATGATAGGCTAAACCGTAAAACCCTAGAACCTGAGTGCGCTCCCTTCCACCCGTAAAACCGTCAACCCACCCAATGTTCTCCCCGTCGACTCGCAAGTCTTCCCTTCTTCGCCAGAAAGATCGCAATCAATGGGATCGCAGAGCTTCTGCTTCGTCGATTTCGTCTCCGTCGGTGCCTCTTCTCTCTGATCATGATCAAACTACACCCGACCGCCCGGCGACAGGCACGCCGGCTCCATGGGCGACTCGCCCATCCGTTGCCGTCAGGATTCCAGTTTTAAAGAATCAAGAAAAGGGAACTGATCTTGATCAAACTAAACCAGTCTATGTTGGGGACTTCCCCGCTCTTCTTCGCGACGCACAAGAGGAACTTCTGCTGCACGAAGTTGCTTCTGGAGATAAGCTATTCGCAGGTGGAATGGATAAGGGAACAGGGCTTTGTTGGATTATCTGTGGAAATAAGATATATGCTTGGAGCTATCTATCTTCTTCGATTTCTAACAAATGCGTGATTCTTGAGATTCCTTCCTCTGTTGTAGAATTAGGAGACGGAAACAGAAGAAAGGTAAGAAATTCTAACCACTGGATAGCCTGCGTAGTTAGATGGGACGTTGCCTCTGCAAAGAATGACAAGGTTTTTTTAGGACTGTGCAATTCGGCTGGTTTCATTATTTGCAATACCAAGACTCATGCTATTGCATATTGGCCTGACATTTTCAAGGAAGAAAGCGTAGACATGCCTGTTTTAGGCCTTCCAGCACTTCTTGAGGTCAAAGAGGACGGACACTGGGATACTAGTTTAGTCGAACTAGATCAAATTAACTCTCTTATTGCTGCCCCGATTTCTAGCTGCTCTAAAGAGTGTATTGCAATAGCTTGTCAATCTAGTGGCAAGTTGTTGCATTTTCATTTTACTCCAGTTGGAATTACTAGAAAGAAGGTTCCTTGTGACATATTTGGTGCTCAGGCAAGCAATAAAAGTTATGCCAGGTCACTAATATGGCATCTTCAACCACAATTGTGCTGCTCGGAAGAACTAGGTTTGCAATTCTTTTTATTGACTGATCGTGAAGTTCAATATTGGAATGTCATACGTTCACCAGAGCCAAATGTAAGAAAAATTTGGACACACGAGATTGTTTGTAGCGATGGTGATCTTGGCATTAAGAAGGATCTGGCGGGGCAGAAGAACATATGGCTTTTGGACATGCAAGTGGATCAGTGCGGTAAAGAAATTATTATTCTTGTAGCAACGTTTTGCAAAGACCGGTTAGGCAGTTCAAGCTATACTCAATATTCTCTTTTAACAATGTTGTGGAAAGCTGGAAAGAGCTTCAGCATAGAAAATCCTGGGGCAATGAGTGCAAGGGGGTTTTTGGAGAAGAAAGCACCTCTTCAGGTTATAATCCCAAAGGCAAGAGTTGTGGATGAAGATTTTTTGTTTTCTATGCGGCTTCGATTTGGAGGCAAACCTTCTGGGTCTGCAATTATATTATCTGGGGATGGGACTGCAACCGTGGCTAATTATCTTAGAGGTTGTATACAACTTTATCAGTTTGATTTGCCATATGATGCAGGAAAGGTTTTGGATGCTTCTGTTTTTCCTTCTGCAGAGGATGATGAAGAAGGGGCATGGGTTGTATTGACTGAAAGAGTTGGAGTGTGGGCTATACCTGAGAAGGCAGTTCTGCTCGGTGGAGTTGAGCCTCCGGAGCGAAGTTTATCACGCAAAGGGAGCTGCAATGAAGGAATCACAGAAGAAGAGAAAAGGATCCAGGCCTTTGCTGGGAATATGGTTCCTAGAAGAGCTAGTTCTGAAGCATGGGGTTCTGGAGACAGACCGAGAGCAGCAGTAAGTGGTATTGCGCAGAGAACTGCTCAAGATGAAGAAGTTGAAGCTCTACTAGGGCGTTTATTTAGTGATTTTGTGATATCCGGTGAAGTTGAAGGTGTTCTTGATAAACTTAAAGCTAAAGGAGCATTTGAAAAGGAAGGTGAAAGAAATGTTTTTGCTCGCATGAGCAAATCTATAGTGGATACACTTGCTAAGCACTGGACTACAACTAGAGGAGCTGAGCTTATGTCATCAGCCTTTTTGTCATCCTTTTTGTTAGATAAACAGAAAAAACATCAAAAGTACCTTCATTTTCTTGCTCTGTCTGGCTGTCTCGAGCAACTTTCTTCCAAGCAGGCCAATACTTTATTGACCGTTATGGAACATGGTGAAAAGCTTTCTAGCATCATTCAACTGAGGGAGTTGCAGAGTGTGGTTTGCAAAAACCGATTAAATGATATTGACACTTCATCTTCGAACTTACAGATAAGTTCTGGTGGTTCTCTATGGGACCTCATTCAATTAGTTGGTGATAAAACCCGCCGAAATACTGTTATGCTTATGGATAGAGATAACGCTGAAGTGTTTTACAGCAAAGCTTCTGATATTGATGAATTTTTCTTTTGCCTTTCTCATCACTTTACTCGTATAATTGGTAAGGATCAGCCTTATAACATTCAGATGCAACGTGCTTATGAAATATCAAATGCATGCTTGATTTTAATTCAGGCTGCCATGCAATATAGACTACAAAACCAGGTCTGGTATCCTTCTCCTGAAGGGTTGATATCTTGGAATTGTCAGCCAGTGGTCAGGTCAGGTTTTTGGTGTGTAGCATCATTTATTATGAAACTGTTAAAAGAGTCACCATTTATTGACATCTCAAGGAAAAATCCGGATCTGTGGTCTCAGTTAGAGGCACTCGCTGACATCATACTGGAGGCTTATACTTGTTCCATTATATCAAAGATTGAAAGAGAAGAGGACCATAGTGGCTTGGTGCAGGAGTACTCGAGTCGGAGGGATGAACTTCTTGATTCCTTGTTTGCACAAACGAAAAAATTTGCAGATGCAATCTATCATGATAAGTGCAACGGTGCTGAAGATGCTGAGGCTAAAGAAACTATTTTTAGAGAAGTTTCATTACCACTACTAGCACTTGCCAAAAGACATGAAGGTTATCCTACACTATTGCATATATGCCATCAGCTTAATGATACTGTACTCCTGAGAAATGTTATGCGGGATAGTAGTGGGCCGAAAGGAGGATTCAGTAAGTTTGTCTTTGAGTATCTCATAAAAAATCATCAATATGCTGAACTTTTGAGACTTGGAGAAGAGTTTCAGAATGAACTAACTCATTTTCTCAAGGATGATAATACTGATCTGTTGTGGCTTCATGAGATATTCTTATCTCAGTTCTCCTCTGCTTCAGAAACTCTTCATGCTCTAGCCCTATCTCAGGATGACAGCTCTGCCTTGATTGAAAGAGGAGAAATTACACGCATCAATATGCCATCTTCTATGGCTGATAGAAGACGTCTTCTTAATTTGTCCAAGATTGCTGTCGCAGCGGGCAAGGAAGAAGGGTTTGAGTTGAAGATGCTGCACATAGAGGCTGATCTCAATATTCTCAAGTTGCAGGAAGAAGTTTTGTCATGTTTACCTGAGATTCTAGGAAAACCAGACAAGAACAAGCTTCTATCCCCGGATGTTCTTATTGAGATGTGCTTTAAAGAACGAAAAGGAAAGCTGTGTTTACTTGCATTTGAAATATTTGCATGGATGGGTTCTTCCTTTCGCAGTTCAAATCGTAGCCTACTTGAGGAAAGTTGGAGAAATGCTGCTGATCAGGATGATTGGATTGCTTTAGCCAATGCATCGAGAGCACAGGGATGGAGTGAGGAACAGGTTTTTCGGAATTTGAGAGAAACGATTCTCTTCAAAGCTTCGTGTCGGTGTTATGGGCCTGAAGCAGATGCGACTTATGAAGGAGCTTTTGAAGAAGTTTTGCCGCTCCAAAAAGATGCTGTGAACTTCACAAGTCCAAGGGAATCAGGCTTGTCAGTGGAAACTATCTTGATGCAGCACAAGAATTTCCCAGATGCAGGGAAGCTGATGCTAACTGCAATCCTTATGGGAAAGGAGGGGATTAATATTGTTGCTGAAACTGAAGAAGAGTTGGCAATGGAGCCTAGATTTTTGTATCTTGGTTAAACTCTTTTTTTTGTCCTATTTTCGATCAGCATTCAGCCATTTTCTTAACAGCTGTTTTTCCTTTAGATGCTGTGGCTGTCTGGAGATGAGTATGTTCCGATGCGATAACCCTGGAGTTATGTGCTATTAAACATGATGATCCTGTGAATTTTTTTCTGACACATGACATTTTGATTCATTCATTGATCAGTCAGTGACCAGGTGCTAGCGTTAGGGGTGGGTGGGGGGGGGATGAAGAAAAGTATAAGCGTATTTGAAGGCTTATGAAGAGCTCATTCTTCATCCTTGTTATTTTATCGCCTTCCCGTGTTTTCTTGCAGTTTGAGGTATGTTTTGGGCTTTTAGCAAGATATCTTAATTGCTATCTTTGATTTGTTGTTATTTGATATCCTTTTTGTAAATTTTGTTATATCCATGTGTTTTACCAATTTTTCTCTGACAATTCGTCTCCAAATTGCAAGTCTCCTTTACATTTCTTTAATCATTCAGTTTTTTGAGTTTTGTAAGTTTTGCATGCTTAATATTTTGTCATTTATTAGGCTTGAAAAACTATTAAAGCTCTTTGTTGAATGCAAATATTGTAGTGATAAGTTGTTTTTATAAAGCTAACCGTCTTGCATATATATATTGTAAATTTATTGATTTTAACTTATATTTAACTTGTTTATTTTCCTTGAAGCCTCTTTCTATGTCTTTGGTTTATTTGCTTAGCTTTCATATGTAAGCATTACATTAGTATTTGAGAGATCCTATTTAGACCCGCTGATGTGGCACTAAAAAAAATCTTTCAATAAAATTTGGACATCATT

Network for GWHGAAEX005370

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08801.10	Nucleoporin_N	105	531	6.20E-28
PF03177.13	Nucleoporin_C	1011	1142	1.10E-12

Protein Sequence

>GWHPAAEX005370
MFSPSTRKSSLLRQKDRNQWDRRASASSISSPSVPLLSDHDQTTPDRPATGTPAPWATRPSVAVRIPVLKNQEKGTDLDQTKPVYVGDFPALLRDAQEELLLHEVASGDKLFAGGMDKGTGLCWIICGNKIYAWSYLSSSISNKCVILEIPSSVVELGDGNRRKVRNSNHWIACVVRWDVASAKNDKVFLGLCNSAGFIICNTKTHAIAYWPDIFKEESVDMPVLGLPALLEVKEDGHWDTSLVELDQINSLIAAPISSCSKECIAIACQSSGKLLHFHFTPVGITRKKVPCDIFGAQASNKSYARSLIWHLQPQLCCSEELGLQFFLLTDREVQYWNVIRSPEPNVRKIWTHEIVCSDGDLGIKKDLAGQKNIWLLDMQVDQCGKEIIILVATFCKDRLGSSSYTQYSLLTMLWKAGKSFSIENPGAMSARGFLEKKAPLQVIIPKARVVDEDFLFSMRLRFGGKPSGSAIILSGDGTATVANYLRGCIQLYQFDLPYDAGKVLDASVFPSAEDDEEGAWVVLTERVGVWAIPEKAVLLGGVEPPERSLSRKGSCNEGITEEEKRIQAFAGNMVPRRASSEAWGSGDRPRAAVSGIAQRTAQDEEVEALLGRLFSDFVISGEVEGVLDKLKAKGAFEKEGERNVFARMSKSIVDTLAKHWTTTRGAELMSSAFLSSFLLDKQKKHQKYLHFLALSGCLEQLSSKQANTLLTVMEHGEKLSSIIQLRELQSVVCKNRLNDIDTSSSNLQISSGGSLWDLIQLVGDKTRRNTVMLMDRDNAEVFYSKASDIDEFFFCLSHHFTRIIGKDQPYNIQMQRAYEISNACLILIQAAMQYRLQNQVWYPSPEGLISWNCQPVVRSGFWCVASFIMKLLKESPFIDISRKNPDLWSQLEALADIILEAYTCSIISKIEREEDHSGLVQEYSSRRDELLDSLFAQTKKFADAIYHDKCNGAEDAEAKETIFREVSLPLLALAKRHEGYPTLLHICHQLNDTVLLRNVMRDSSGPKGGFSKFVFEYLIKNHQYAELLRLGEEFQNELTHFLKDDNTDLLWLHEIFLSQFSSASETLHALALSQDDSSALIERGEITRINMPSSMADRRRLLNLSKIAVAAGKEEGFELKMLHIEADLNILKLQEEVLSCLPEILGKPDKNKLLSPDVLIEMCFKERKGKLCLLAFEIFAWMGSSFRSSNRSLLEESWRNAADQDDWIALANASRAQGWSEEQVFRNLRETILFKASCRCYGPEADATYEGAFEEVLPLQKDAVNFTSPRESGLSVETILMQHKNFPDAGKLMLTAILMGKEGINIVAETEEELAMEPRFLYLG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14300	NUP133	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.970
SRP064423	SRR2545915	Juvenile tuber	12.390
SRP108465	SRR5643513	five period of Gastrodia elata	9.140
	SRR5643514	five period of Gastrodia elata	9.840
	SRR5643515	five period of Gastrodia elata	9.430
	SRR5643524	five period of Gastrodia elata	10.900
	SRR5643525	five period of Gastrodia elata	8.080
	SRR5643528	five period of Gastrodia elata	7.470
	SRR5643658	five period of Gastrodia elata	6.530
	SRR5643659	five period of Gastrodia elata	12.920
	SRR5643660	five period of Gastrodia elata	13.740
	SRR5643661	five period of Gastrodia elata	11.950
	SRR5643662	five period of Gastrodia elata	11.390
	SRR5643663	five period of Gastrodia elata	11.160
	SRR5643664	five period of Gastrodia elata	11.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.860
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.410
SRP279888	Gastro	Gastrodia elata tuber	15.99
	Juven	Juvenile tuber	19.81
	Mother_Gastro	Mother tuber of Gastrodia elata	15.41
	Mother_Juven	Mother tuber of Juvenile	22.82