Gene detail

Detail information of GWHGAAEX005372/evm.TU.scaffold_161.83

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2025	Chromosome condensation complex Condensin, subunit G
nr	gi\|672167879\|ref\|XP_008803918.1\|	PREDICTED: condensin complex subunit 3 [Phoenix dactylifera]
trEMBL	tr\|M0U0Q1\|M0U0Q1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P15940_001}
TAIR	AT5G37630	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000166	2301203	2333072	-

Transcript Sequence
>GWHTAAEX005372 ATAAGTTGAAACTGCGCGGCCTGGGTCTGTCTCAGCGAATGAAAGCACAATGAAGATCACAGGAAGCGGCATCAAAAGAGAGCGCAATCGCAGTGCGCGCCAAGAGGCAGAGGAGTGTGCTGAAACGGCAGGCGATCGTCATCTCGTTCGTCAGATCGCAGAAATGCTCGACGAGTGCCGACTCTCCCACGCCGTCCATGCCCGAAAGCTGAAGGAGCTCACCGCCATCCGCTCATCCGCTCATACTAATTGCTTTTTCCAATCATTCGCCCAGGCTATCAGAACGCTCTTTGATTTCTCTCGTCGGACGTCTTCATCAGAGCGCGCCGTACGTTTCATCGCCGCCTTTGCCGCACGGCGCGATGCTAAAAACGCTGTCGCTTGCGATGCTTTTCTTGCGGAGTTCCTGCGATTCCTTCTAATCGGTGCTTGCGCGGCTCATCGGGCTGCTAGGCTTAGATCGTGCCACATCATATCAGAGATTATTATGCGTCTACCGGATGATGCAGATGTGAGTGACGAAGTGTGGGATGAAGTTATAGACTGCATGAAGAACCGCCTGGAAGACAAAGTGCCTACAATTCGCTGTTTTGCAGTTCGTGCATTGTCACGCTTTGCAAGTGATGCCGAGAATTCTGACATTGTTGAACTCTTCCTAAAGAACTTGTCTCTGGAACAAAATGCTGATGTCCGTAAATTGATTGTCCTATCACTGCCACCTTCTAATGCCACGTCTTCTTCTATTGTCAACTCTACTGGTGATGTTAATGAGTTAGTTAGGAAGGCTGCATACTGCGTTTTGGGGAGTAAATTTCCACTTCGAAGTCTTAGCATAAAACACAGGACTGCTGTTCTCGAGAGGGGTCTTTCAGATAGGTCTCCTCAAGTCATGAAAGAGTGCTATAAGATGCTGACAGAAGAGTGGCTAACAAAATGCTGCAATAAGGATCCTCTTGTTCTTTTGAGATATCTTGATGTAGAAACCTATGAGTCAGTTGGAGAGGCAGTGATGGATGCGCTTCTAAAAGGTGGTATGGTGCATGACAAGGAAGGTCAAAGCATCAGGCAACATTTGTCTAAATCAGAAGGAAATGAAGGGAATTGCAGTTCCAGTATTCAGCTAATGGAGGCCGAGGCTTCTCTTTACTGGAGGACTCTTTGCAGGCATTTGCATTGCGAAGCTCAAGTTAAGGGTTCCGACGCTGCAAATACTACAGGCGCCGAAGCAGTATTCTATGCATCAGAGGCTTCAGTAAAGAACGACCTTCTGGATACTCTGCTCCCCGAGACAACATCAGATTACGTTGATTTGGTGAAGGCTCATCTTTCGGCAGGGACTGCGTACCGGTTTGTCACCCGGCAACTGCTGCTTCTGGGGGCGATGCTGGATTTTTCAGACATCGCGAATAGGAAGATCGCAGGTTCCTTGGTGCAGCATCTTCTTCTGCTGGGCCCTCTAGACGGCGACATGAATAATGCCATTGATGACGGGGTGAGCTTGGGCGGAGACAGGCGCTGGGCAAGCGCGGTCGCAGGGCTCGCAAGAAGAGTCCACGCCTCCGCTGGGGAGTTCGAAGCCACCGTCAGTTCCATCCTGAAGGAGCTCGCTCAGCCTTGCCGTGAGAGGGCCGCAGATTCTCCCCAGTGGATGCACTGCCTTTCAGTCGCCTCCCTCCTCCTTGAGAACGCGCCATCTCTGCTCCATCAGGCAGAGATGCTGCACTCCTTGCTGCTGCCGGCAGCCAGGCAAACCCGTTGCTCACAAGTGCAGAGGGCGGCCGCCCGCTGCCTGTGCCTCTACGGCCTGCTTGAAACCAGGCCCAGCCCAGACGCAGTGAGCCAGCTGAGGCTGCTCCTCGTCAGCGGCCCTCGTCGCGTCCGCTCGATGGCCTGCAAAGCGCTGGTGGATCTCGCCATGTGGCACGGCCTTGAAGAGGTCGACGCGGCCACAGGCATCGTTGACATGGGACTGATTCATCTCCTGTTTTCTGCTGCAGTGAAGCATCCATCAGATGATGATGATGATGATGATAATGATGATGAGCAGGAGGAGGATAGCCCTGTCTGTGCTATTGGGGAAGGCTTGGCCAAGTTTCTTCTTTGGAGCGACAAGTATCCGGCGAGCATTCCCAGCAGCGTGCAGCTGCTGCTGTTGAGAAGGCTGATAGGTCTGTATTTCAGCGATGAAATCAAGGAGAAGCCGAAGCTGGCGCAGTGCCTGTCAGTCTTCTTCGAGCATTATCCGGCGCTGGCTCCCCATCACAAGGGGTGCGTTTCCAGAGTCTTTATTCCGGTGATGCGGGAGATGTGGCCCGGGGTTTATGGCAACCCGGCAGGCGCCTCTTCTGTGGCGGTGTTCAGAAAGAGGAAGGTTGCGGTTCAAGCCTCCAGGTTCATGCTGCAGATGATGCAGGCGCCCATGCTCCTCTCCAAGCAACTCCCACCTAAACTTGGAATTGATTGCAGAGAAGAAGGCCTAGCGATTCGCATTGCCGCTGAGGTGGTGAGCTTCCAGGAGAAGAAGACATCAGCTGCGAAATCCTATATTGCGGCACTGTGCCGAGTTGCGGTGCTCATTCGGTTCCAATCGGACGAAGCCGACGGCATAAAATGCATGAGAGGTCTGATGCACGGCCTGATGACAGCTGCGTCGCATGACAAGGAGCTTCTGAGCGAACTGAATCTGATGGCGACTCATCTCCAATCCCTCGAACCTCATCCTGACGGGGAATTCCCGCCGGTTCGCGTTCGCGCTATTTTCAAGGCGCTCGAATTGGACGAAAGCGCTGCCGCGTTCCGCCTGCCTGGGCAGATGACGCCCGTGCAGGCATCCGGCAGGGCCGCGGCCACACGCAGAAGGGTCCGCCGCGAGGCCTCTTCTTCCGACGAAGACGAGGGCGATGGCCTCCCCTTTGAGGCTGCGTTCACTCCCAGCGTGGTGGTGAGCGTGCGGTCTCAGCGGGCTAGCAAGACGGCTGCGATGAGCCGGATGACCGCAAGGCCAGGCCTTGAAGAAGAAGATGATGGATCTAGCTTGACCTCAGAGGGCCAGTCAGATGAAGATGCCTATGGGTCTGCAGAGTAAGCCCTGGTATGTTTTCTCTCAATAAAATAGAGATAGCAGCTTTTGGTTCAATGTTATGTTAATTAAAGTTGTATTTATTCACTAAGTTACCATCTCACTGTTTGGCACAAGCGATATATACTTGAAATTGAACATCATTATTTTAATGGTATTTTATGTTATCGAACCAACGAGATTTCACTTTCAGGAGCATTATTTGCAAGTTAAGCAATTAAAAACCCCAATATTAC

Network for GWHGAAEX005372

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12719.6	Cnd3	535	843	2.90E-43

Protein Sequence

>GWHPAAEX005372
MKITGSGIKRERNRSARQEAEECAETAGDRHLVRQIAEMLDECRLSHAVHARKLKELTAIRSSAHTNCFFQSFAQAIRTLFDFSRRTSSSERAVRFIAAFAARRDAKNAVACDAFLAEFLRFLLIGACAAHRAARLRSCHIISEIIMRLPDDADVSDEVWDEVIDCMKNRLEDKVPTIRCFAVRALSRFASDAENSDIVELFLKNLSLEQNADVRKLIVLSLPPSNATSSSIVNSTGDVNELVRKAAYCVLGSKFPLRSLSIKHRTAVLERGLSDRSPQVMKECYKMLTEEWLTKCCNKDPLVLLRYLDVETYESVGEAVMDALLKGGMVHDKEGQSIRQHLSKSEGNEGNCSSSIQLMEAEASLYWRTLCRHLHCEAQVKGSDAANTTGAEAVFYASEASVKNDLLDTLLPETTSDYVDLVKAHLSAGTAYRFVTRQLLLLGAMLDFSDIANRKIAGSLVQHLLLLGPLDGDMNNAIDDGVSLGGDRRWASAVAGLARRVHASAGEFEATVSSILKELAQPCRERAADSPQWMHCLSVASLLLENAPSLLHQAEMLHSLLLPAARQTRCSQVQRAAARCLCLYGLLETRPSPDAVSQLRLLLVSGPRRVRSMACKALVDLAMWHGLEEVDAATGIVDMGLIHLLFSAAVKHPSDDDDDDDNDDEQEEDSPVCAIGEGLAKFLLWSDKYPASIPSSVQLLLLRRLIGLYFSDEIKEKPKLAQCLSVFFEHYPALAPHHKGCVSRVFIPVMREMWPGVYGNPAGASSVAVFRKRKVAVQASRFMLQMMQAPMLLSKQLPPKLGIDCREEGLAIRIAAEVVSFQEKKTSAAKSYIAALCRVAVLIRFQSDEADGIKCMRGLMHGLMTAASHDKELLSELNLMATHLQSLEPHPDGEFPPVRVRAIFKALELDESAAAFRLPGQMTPVQASGRAAATRRRVRREASSSDEDEGDGLPFEAAFTPSVVVSVRSQRASKTAAMSRMTARPGLEEEDDGSSLTSEGQSDEDAYGSAE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06678	YCG1, CAPG	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.020
SRP064423	SRR2545915	Juvenile tuber	3.230
SRP108465	SRR5643513	five period of Gastrodia elata	7.770
	SRR5643514	five period of Gastrodia elata	11.000
	SRR5643515	five period of Gastrodia elata	6.270
	SRR5643524	five period of Gastrodia elata	10.610
	SRR5643525	five period of Gastrodia elata	0.950
	SRR5643528	five period of Gastrodia elata	0.980
	SRR5643658	five period of Gastrodia elata	0.860
	SRR5643659	five period of Gastrodia elata	3.380
	SRR5643660	five period of Gastrodia elata	3.080
	SRR5643661	five period of Gastrodia elata	4.400
	SRR5643662	five period of Gastrodia elata	3.070
	SRR5643663	five period of Gastrodia elata	3.430
	SRR5643664	five period of Gastrodia elata	2.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.560
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.620
SRP279888	Gastro	Gastrodia elata tuber	3.37
	Juven	Juvenile tuber	5.26
	Mother_Gastro	Mother tuber of Gastrodia elata	1.12
	Mother_Juven	Mother tuber of Juvenile	2.95