Detail information of GWHGAAEX005377/evm.TU.scaffold_162.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|375148916|ref|YP_005011357.1|2.00E-107coproporphyrinogen oxidase [Niastella koreensis GR20-10]
KOGKOG15180Coproporphyrinogen III oxidase CPO/HEM13
nrgi|672164851|ref|XP_008802314.1|0PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic-like [Phoenix dactylifera]
Swissprottr|P35055|HEM6_SOYBN0Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic (Precursor)
trEMBLtr|V7BAC5|V7BAC5_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW14540.1}
TAIRAT1G034750Coproporphyrinogen III oxidase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015663571101057+
Transcript Sequence

Network for GWHGAAEX005377

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01218.17Coprogen_oxidas923944.50E-136
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00228CPOX, hemF Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0006779Biological Processporphyrin-containing compound biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0004109Molecular Functioncoproporphyrinogen oxidase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.060
SRR2545915Juvenile tuber15.920
SRP108465SRR5643513five period of Gastrodia elata22.850
SRR5643514five period of Gastrodia elata22.550
SRR5643515five period of Gastrodia elata24.800
SRR5643524five period of Gastrodia elata21.290
SRR5643525five period of Gastrodia elata35.440
SRR5643528five period of Gastrodia elata41.650
SRR5643658five period of Gastrodia elata34.350
SRR5643659five period of Gastrodia elata13.900
SRR5643660five period of Gastrodia elata17.810
SRR5643661five period of Gastrodia elata20.280
SRR5643662five period of Gastrodia elata25.410
SRR5643663five period of Gastrodia elata22.600
SRR5643664five period of Gastrodia elata20.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.700
SRR6049655Rhizomagastrodiae_C368-T10_good_120.460
SRR6049656Rhizomagastrodiae_C368-T07_good_123.180
SRR6049657Rhizomagastrodiae_C368-T07_good_122.450
SRR6049658Rhizomagastrodiae_C368-T04_good_120.490
SRR6049659Rhizomagastrodiae_C368-T04_good_122.290
SRR6049660Rhizomagastrodiae_C368-T01_good_120.210
SRR6049661Rhizomagastrodiae_C368-T04_good_119.430
SRR6049662Rhizomagastrodiae_C368-T01_good_122.880
SRR6049663Rhizomagastrodiae_C368-T01_good_118.260
SRR6049664Rhizomagastrodiae_C368-T10_good_122.560
SRR6049665Rhizomagastrodiae_C368-T10_good_122.560
SRP279888GastroGastrodia elata tuber 32.50
JuvenJuvenile tuber40.16
Mother_GastroMother tuber of Gastrodia elata 31.36
Mother_JuvenMother tuber of Juvenile 26.00