Detail information of GWHGAAEX005378/evm.TU.scaffold_162.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|11499558|ref|NP_070800.1|5.00E-115proteasome-activating nucleotidase [Archaeoglobus fulgidus DSM 4304]
KOGKOG0729026S proteasome regulatory complex, ATPase RPT1
nrgi|720041713|ref|XP_010268998.1|0PREDICTED: 26S protease regulatory subunit 7 [Nelumbo nucifera]
Swissprottr|O64982|PRS7_PRUPE026S protease regulatory subunit 7
trEMBLtr|M0U8L3|M0U8L3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP12540_001}
TAIRAT1G537500regulatory particle triple-A 1A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000156188015212465+
Transcript Sequence

Network for GWHGAAEX005378

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.28AAA2043362.20E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03061PSMC2, RPT1 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0030163Biological Processprotein catabolic process
GO:0005524Molecular FunctionATP binding
GO:0016787Molecular Functionhydrolase activity
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms296.280
SRR2545915Juvenile tuber209.240
SRP108465SRR5643513five period of Gastrodia elata192.320
SRR5643514five period of Gastrodia elata194.600
SRR5643515five period of Gastrodia elata182.390
SRR5643524five period of Gastrodia elata194.460
SRR5643525five period of Gastrodia elata204.490
SRR5643528five period of Gastrodia elata200.170
SRR5643658five period of Gastrodia elata180.630
SRR5643659five period of Gastrodia elata243.640
SRR5643660five period of Gastrodia elata268.420
SRR5643661five period of Gastrodia elata248.680
SRR5643662five period of Gastrodia elata265.700
SRR5643663five period of Gastrodia elata255.650
SRR5643664five period of Gastrodia elata304.290
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1224.980
SRR6049655Rhizomagastrodiae_C368-T10_good_1151.540
SRR6049656Rhizomagastrodiae_C368-T07_good_1210.330
SRR6049657Rhizomagastrodiae_C368-T07_good_1261.540
SRR6049658Rhizomagastrodiae_C368-T04_good_1277.210
SRR6049659Rhizomagastrodiae_C368-T04_good_1291.180
SRR6049660Rhizomagastrodiae_C368-T01_good_1228.570
SRR6049661Rhizomagastrodiae_C368-T04_good_1253.710
SRR6049662Rhizomagastrodiae_C368-T01_good_1185.480
SRR6049663Rhizomagastrodiae_C368-T01_good_1199.740
SRR6049664Rhizomagastrodiae_C368-T10_good_1203.010
SRR6049665Rhizomagastrodiae_C368-T10_good_1203.010
SRP279888GastroGastrodia elata tuber 265.88
JuvenJuvenile tuber298.95
Mother_GastroMother tuber of Gastrodia elata 137.37
Mother_JuvenMother tuber of Juvenile 230.91