Gene detail

Detail information of GWHGAAEX005379/evm.TU.scaffold_162.11

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|430747186\|ref\|YP_007206315.1\|	2.00E-140	O-linked N-acetylglucosamine transferase, SPINDLY family [Singulisphaera acidiphila DSM 18658]
KOG	KOG4626	0	O-linked N-acetylglucosamine transferase OGT
nr	gi\|743863412\|ref\|XP_010943786.1\|	0	PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Elaeis guineensis]
Swissprot	tr\|O82039\|SPY_PETHY	0	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
trEMBL	tr\|M0SGX7\|M0SGX7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P22610_001}
TAIR	AT3G11540	0	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000156	443195	516862	-

Transcript Sequence
>GWHTAAEX005379 ATAAGAGAAAGATCGAGAGAGGCGGAGGAGGAGGCCAAGAAGGCTCTTGCTGTGCAGACGCGGGAAGAGGAAACGTTGGCCCGGGCTCCCGACGACGGCGTTGGCACAACCAGTGAGGTCGTTGAGGCCTATAGCGGCCAGATATTTCCTGTGCGCCAGGCTTCGTGCGTAGTGGAGGAGCAGCTGCGGAGCGAGGATGAACGGGTAGACACGGGGACGAGGGAGGTGAGTGCGCACGTGAGGTAGGTGGGGATATGGGGCACACGGTTGACAAGGGAGGGAATAAATTCGATGGGAAGGATGCACTGTCTTACGCCAATATTCTTCGTTCTCGAAACAAATTTGGTGATGCTCTTGTGTTGTATAATGTTGTTCTTGAAAAGGAAAGTGACAACCTCGAAGCCCTTGTAGGAAAAGGGATTTGCCTGCAGGCGCAGAATCTGAATCTGCAAGCTTTGGACAGTTTTATGGAAGCGATTAAGTTGGACCCACAAAATGCATGTGCTCTTACTCATTGCGGAGTTTTGTACAAGGACGAAGGCCGTCTTCTTGAAGCTTCTGAGTCATATCAAAAAGCTCTCAAGGCGGACCCCTCGTACAAACTCGCTGCAGAATGTCTTGCAGTTGTTCTGACAGATATCGGGACTAGCTTAAAACTTGCTGGGAACACAGAGGCTGGTATTCAAAAATATTGTGAAGCCCTTAATGCAGACAGTCGATATGCGCCTGCATATTATAATCTTGGAGTTGTGTACTCAGAGATGATGCAATTTGATTTGGCACTTAGTTGTTATGAAAAGGCTGCCTTGCAGAGGCCTATGTATGCAGAAGCATACTGCAATATGGGGGTTATATATAAGAATCGTGGGGACCTAGAAACTGCTATTGCTTGCTATGAAAGGTGTTTAGCTGTATCTCCAAACTTTGAGATTGCAAAGAATAACATGGCAATAGCTTTGACTGATATGGGCACCAAGATTAAACTTGAGGGGGATATATCTCAAGGTGTAGAGCTATACAAGAAAGCTTTGTGCTACAATTGGCGCTATGCGGATGCAATGTATAATCTTGGTGTAGCCTATGGTGAAATGCTGAAATTTGACATGGCAATTGTATTTTACGAACTTGCATTGCATTTCAACCCCCATTGTGCGGAGGCGTGCAACAATTTAGGAGTAATATACAAAGATAGGGATAATCTTGATAAAGCTGTGGAGTGTTATCAGATGGCATTGTCTATCAAACCAAACTTCTCGCAGTCACTAAATAACCTTGGGGTTGTTTATACAGTTCAGGGTAAAATTGATGCAGCAGCAGGCATGATTGAGAAAGCTATTGCAGCAAATCCCACATATGCCGAAGCTTACAATAACTTAGGAGTTCTTTATCGAGATGCTGGCAATATTAACTTGGCTATAGAAGCGTATGAAAGATGTCTTGAGATAGATCCCGATTCAAGAAATGCCGGTCAGAACCGACTACTTGCAATGAACTATATAAATGAAGGCTCTGACGAAAAGCTGTTTGAGGCGCACAGGGAATGGGGAGGACGCTTTATGAGGCTTTATCAACAATACACAAGTTGGGATAATCCTAAAGTTATGGAGCGACCTCTAATCATCGGATATATTTCTCCTGATTATTTTACTCATTCTGTGTCATATTTCGTTGAAGCTCCTCTTTCATTCCATGACTATACTGAATACCAGGTGGTTGTGTACTCAGCAGTTGTGAAGGCAGATGCCAAAACATGCAAATTCAAGGAAAGAGTGCTCAAAAAGGGTGGTCTATGGAGAGATATTTATGGCATCGATGAAAAAAAGGTTGCTCACATGGTAAGAGTTGATAAAGTTGACATACTTGTGGAGCTTACTGGCCATACTGCAAACAACAAGTTAGGAACATTAGCATGCAGACCAGCTCCTGTTCAGGTAACTTGGATTGGATATCCGAATACATCCGGTTTACCCTCCGTTGATTACAGAATCTCTGACATGTTTGCGGATCCACCTACTTCTTGTCAAAAGCAAGTTGAAGAGTTGGCTCGACTACCTAACTGTTTTCTCTGCTATACTCCTTCCCCTGAAGCTGGTCCTGTATCCCCTGCCCCTGCACTCTCAAATGGTTTTATTACTTTTGGGAGCTTTAATAATCTAGCAAAGATAACACCCAAAGTATTAAAAGTTTGGGCAAGGATATTATGTTCTGTCCCAAATTCGAGATTGATTGTAAAGTGTAAGCCATTTTGCTGTGAAAGTATCAGGCATAAGTTTCTCTCTATTCTGGAGCAACTAGGTGTCAAGCCTTTGCGTGTAGATCTCTTACCTTTAATTCTTCTAAATCATGATCACATGCAAGCATACTCACTAATGGATATAAGTTTAGATACATTTCCATATGCTGGAACAACTACAACATGCGAATCTTTGTACATGGGCGTCCCATGTGTGACTTTGGCTGGATCCATACATGCTCATAATGTTGGGGTCAGCCTTCTTAGCAATGTTGGCTTAGAGCGTCTGGTTGCAAAAACTGAAGATGAGTATGTTCAGATGGCTGTGAAGTTAGCATCCGACGTTTCTTCTCTCTCAGAACTGAGAATGTCTCTCCGTGAACTTATGCTGAAATCTTCCCTTTGTGATGGGCTGAAGTTCACTAAGCGACTGGAGTCATTGTATAGGAACATGTGGCATAGATATTGCCGAGGTGATTCTCCAGCCATCCAGCAAATTGAAGCTCTTCAGCATGAGCAGCAGCAACAACATAATAAGCATTCTGACAAGATTACGGTCATTTTTTCGAAACCTTCTAAAGCAGGTTGTGTGGAAGAACGCCATTGTCTTTCTGCAAAGGCAAATGGATGTGGCTTCGGGACATCCTCCTGTTTAACAACACCTACTGGAATTGATAAAAACATAACAAATGGTATCTAAGCCTTGATCAGTTTCAGTATCTGCAGTCTTTTATTCTTCTTTGTTATAGCGATCCCGTTCGGGGTGTGTTTCAAATTCCTGCCTGCTGTAGCTGCTTTTGGGAGCTTCATTTCTTCTTCAGAGGACAGATTGTGGTAGCAATATTTTTTAGGCTCAGGTGATGATATTTTTGGAAGTTCTGCGTAGGTGGTAACCTTAGTTGTAACGGAGCTATTGATATACCAATGAAGGGCCCTATTTTTAGGATTACATGCGTTTTCTTAAAGCTTTTTTCTTTCTTAATTTTAGAACTGTTCTAGAAAACTAGGGGAATTGTTCTTTCTCACGAAAGAAATGAACAGATCATGCCTGTGTAAAGGAATCCTAATTTGAGCAAGTAGATCACCCATCTCTCTATTTTACTCGGCACAACTGTCAATGTTGTGTAATGTTTATTATTAACGAGCTGAGATGCTTGGCTTGAAACGCCCACAATGCAAGTGTACTTTTATGCTAACAAATATCATAACATACAAAATATTATGAAGCCACTAAAGTTAATAAGG

Network for GWHGAAEX005379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13181.5	TPR_8	89	114	0.0031
PF00515.27	TPR_1	157	185	3.70E-07
PF00515.27	TPR_1	191	224	5.20E-10
PF00515.27	TPR_1	266	299	3.70E-07
PF00515.27	TPR_1	300	333	6.00E-10
PF13374.5	TPR_10	336	363	0.0017
PF00515.27	TPR_1	368	400	1.60E-10
PF13844.5	Glyco_transf_41	455	604	1.50E-23
PF13844.5	Glyco_transf_41	621	812	8.90E-30

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT41

KEGG pathway

KO	Enzyme	pathway	mapID
K09667	OGT	Other types of O-glycan biosynthesis	map00514

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.370
SRP064423	SRR2545915	Juvenile tuber	68.380
SRP108465	SRR5643513	five period of Gastrodia elata	38.880
	SRR5643514	five period of Gastrodia elata	34.010
	SRR5643515	five period of Gastrodia elata	36.790
	SRR5643524	five period of Gastrodia elata	36.980
	SRR5643525	five period of Gastrodia elata	25.380
	SRR5643528	five period of Gastrodia elata	27.000
	SRR5643658	five period of Gastrodia elata	25.860
	SRR5643659	five period of Gastrodia elata	37.360
	SRR5643660	five period of Gastrodia elata	43.190
	SRR5643661	five period of Gastrodia elata	36.630
	SRR5643662	five period of Gastrodia elata	36.980
	SRR5643663	five period of Gastrodia elata	43.250
	SRR5643664	five period of Gastrodia elata	36.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.560
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.160
SRP279888	Gastro	Gastrodia elata tuber	47.21
	Juven	Juvenile tuber	44.73
	Mother_Gastro	Mother tuber of Gastrodia elata	41.55
	Mother_Juven	Mother tuber of Juvenile	40.43