Gene detail

Detail information of GWHGAAEX005386/evm.TU.scaffold_162.24

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743820427\|ref\|XP_010931777.1\|	1.43E-137	PREDICTED: F-box protein At5g49610 [Elaeis guineensis]
Swissprot	tr\|Q9FGY4\|FB341_ARATH	4.00E-113	F-box protein At5g49610
trEMBL	tr\|M0TN35\|M0TN35_MUSAM	3.00E-131	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P06320_001}
TAIR	AT5G49610	1.00E-112	F-box family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000156	1652819	1654623	-

Transcript Sequence
>GWHTAAEX005386 TCTCTTACCTTTTCTAGTGTTAATACATACTATAAATGTATTAGAGCTTTTTGGCCTCAATCACTTCTAAACTATATTTTGTATTTCTTGTAAACTGTAAAGTTATAGGGAAAAATTCCATAGCATTTCCACCACATTAGCTTTAATTGTGTTCTTTGCCATGTTTCATTATTTGTTTGTGCTGCCTAATTGATACAATTAGCACTCCAAATGAAGATTTGCAAATCATTCTCAATAATCTAATTAAAGAATTTTAGTAATGCAAGTCATTTGATCATTTTCCTTTTCTATACAACCGATCCTTTTACCGTGCTGCTTCACTTGAACCTTATGGGCACCGCAGATTCCCCAAATGTTATCCTCCCATCTGATGTCATCCTCCTGATCCTCGCGAGACTCCCTGTCAAATCCCTTTTCCGCTTCAAATCCGTTTGCAGATCATGGTGCAGTCTGCCTTCCGAGAAGCACTTTATTAAGTTATACTCCGTTACTTCTTCGGATAAGTCCAATGTTCTATTAGAGACCATAGAACCCGCGAATCACATCTCCAATTTCATCATCATCGACAGATTCGATACCCCTTCGTGCTTTTCATTGAATTTCATGGAAGATAGAGTCAGAGTGAGAGCTTCCTGCAGCGGCCTCCTGTGTTGTTCCAGTATCCCTAACCGGGGACTCTTCTATGTTTGCAATCCGATGACGAGAGAGTTCAGAATGCTCCCGAGAACCAGAGAAAGGCCGTTCACAAGATTCCACCCTGATTTCGAGGAAACCCTCGTAGGATTGTCTTTTGATCCATGTTCCTGGAGGTTCAATGTAGCCGTGGCAGGATTTTATCGGCCATTTGGCCGGAGACCGCATGAAGAGCTCGTGTGCATGGTGTTTGACTCAGGGACGAACTCCTGGAGTAGCTGCTCCTATGTGCTTGCGTTTGATTTGAATGTTAATATATGGCGGAAGATTTGGTTGCCTGAGGAGATAGTTGCTTTTGGTTCCTGCGGCAGAATTTATTTGCTGGAGTTGGAGGGTTCTATCTCTTTGATTCAGATATTAGGTATTTGGTTGAATATATGGTGTTTAAAGGATTATGACAGGGAGCATTGGGTTCTTATTGACAGAGTTCATCTCAGGTGCATCCGTGGGCTCATTGCCAGTGCATTTCCCGTATGCATGAGTAAGGATGATGTGTTTTTGGCAACACAAAGGAAAATTTTGATTTATGGTAGAAAGAACAAGGTGTGGAAGGAGATTTTTTCTACCAGTGACAACGTAACACATCCTCTTTGGTTCTCGGCACATCCTTTCAAGAGCACTCTATCTCCCTGTGACTAAGGATTATTTGGTGCATCTTTTTCTTGACACGTTGAACTAAGTTCACCACCTCTTTGGAAGCACCATGCAATTGAATTTTTCTTTGTACAGCTCAACAAAGCATGAACCAAACGAAGGTTTAGCATTGAAGTTTCCTTTTAATTCATAGAAGAAGACATATGTCTGTAGGTGTGGCAATGGAAAACTGTATGTTGAAATTTTATCATTTACTTCTTGTTCTATATATTTTTGTATCTCTTACTTCATCTTGTATATTGAAACTAATTAATGTTTCTCCTTGAGTTTATATAGTAATTAGTCACATCTTATTGTTACGCTGTTAAAGTCAGTTTCATTTGTGTAAATAAATTGATCTTATAATCTCTCTTATGGGTATATACTGG

Network for GWHGAAEX005386

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.32	F-box	11	41	1.90E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.360
SRP064423	SRR2545915	Juvenile tuber	7.000
SRP108465	SRR5643513	five period of Gastrodia elata	3.890
	SRR5643514	five period of Gastrodia elata	3.960
	SRR5643515	five period of Gastrodia elata	4.460
	SRR5643524	five period of Gastrodia elata	4.130
	SRR5643525	five period of Gastrodia elata	6.050
	SRR5643528	five period of Gastrodia elata	3.080
	SRR5643658	five period of Gastrodia elata	4.920
	SRR5643659	five period of Gastrodia elata	3.150
	SRR5643660	five period of Gastrodia elata	2.760
	SRR5643661	five period of Gastrodia elata	3.750
	SRR5643662	five period of Gastrodia elata	5.170
	SRR5643663	five period of Gastrodia elata	3.420
	SRR5643664	five period of Gastrodia elata	5.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.870
SRP279888	Gastro	Gastrodia elata tuber	3.62
	Juven	Juvenile tuber	3.58
	Mother_Gastro	Mother tuber of Gastrodia elata	3.56
	Mother_Juven	Mother tuber of Juvenile	2.09