Detail information of GWHGAAEX005387/evm.TU.scaffold_162.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3108 | 2.00E-58 | Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit |
| nr | gi|695008983|ref|XP_009391101.1| | 2.16E-96 | PREDICTED: replication protein A 32 kDa subunit A-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6H7J5|RFA2B_ORYSJ | 9.00E-74 | Replication protein A 32 kDa subunit B |
| trEMBL | tr|M0UBF8|M0UBF8_MUSAM | 3.00E-93 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP22500_001} |
| TAIR | AT2G24490 | 2.00E-58 | replicon protein A2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000156 | 1927396 | 1943189 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005387
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01336.24 | tRNA_anti-codon | 71 | 136 | 3.00E-06 |
| PF08784.10 | RPA_C | 207 | 267 | 1.50E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10739 | RFA2, RPA2 | DNA replication | map03030 |
| Nucleotide excision repair | map03420 | ||
| Mismatch repair | map03430 | ||
| Homologous recombination | map03440 | ||
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0006260 | Biological Process | DNA replication |
| GO:0006310 | Biological Process | DNA recombination |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.620 |
| SRR2545915 | Juvenile tuber | 1.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 101.290 |
| SRR5643514 | five period of Gastrodia elata | 126.690 | |
| SRR5643515 | five period of Gastrodia elata | 100.710 | |
| SRR5643524 | five period of Gastrodia elata | 123.430 | |
| SRR5643525 | five period of Gastrodia elata | 179.540 | |
| SRR5643528 | five period of Gastrodia elata | 186.570 | |
| SRR5643658 | five period of Gastrodia elata | 235.960 | |
| SRR5643659 | five period of Gastrodia elata | 64.270 | |
| SRR5643660 | five period of Gastrodia elata | 67.710 | |
| SRR5643661 | five period of Gastrodia elata | 63.920 | |
| SRR5643662 | five period of Gastrodia elata | 71.000 | |
| SRR5643663 | five period of Gastrodia elata | 76.050 | |
| SRR5643664 | five period of Gastrodia elata | 78.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 49.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 62.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 73.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 73.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 45.94 |
| Juven | Juvenile tuber | 106.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 50.01 | |
| Mother_Juven | Mother tuber of Juvenile | 80.69 |