Detail information of GWHGAAEX005392/evm.TU.scaffold_163.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|433654443|ref|YP_007298151.1|1.00E-38ribosomal methyltransferase Rsm22 [Thermoanaerobacterium thermosaccharolyticum M0795]
KOGKOG25398.00E-161Mitochondrial/chloroplast ribosome small subunit component
nrgi|672189478|ref|XP_008775004.1|0PREDICTED: methyltransferase-like protein 17, mitochondrial isoform X1 [Phoenix dactylifera]
trEMBLtr|M0SSI0|M0SSI0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P27180_001}
TAIRAT1G646008.00E-161methyltransferases;copper ion binding

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001591854486197-
Transcript Sequence

Network for GWHGAAEX005392

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09243.9Rsm221113688.20E-51
PF09243.9Rsm224545182.80E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0008168Molecular Functionmethyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.680
SRR2545915Juvenile tuber15.590
SRP108465SRR5643513five period of Gastrodia elata16.790
SRR5643514five period of Gastrodia elata17.930
SRR5643515five period of Gastrodia elata13.250
SRR5643524five period of Gastrodia elata17.490
SRR5643525five period of Gastrodia elata9.340
SRR5643528five period of Gastrodia elata6.830
SRR5643658five period of Gastrodia elata6.370
SRR5643659five period of Gastrodia elata16.920
SRR5643660five period of Gastrodia elata16.890
SRR5643661five period of Gastrodia elata15.990
SRR5643662five period of Gastrodia elata15.230
SRR5643663five period of Gastrodia elata15.580
SRR5643664five period of Gastrodia elata18.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.580
SRR6049655Rhizomagastrodiae_C368-T10_good_120.060
SRR6049656Rhizomagastrodiae_C368-T07_good_115.590
SRR6049657Rhizomagastrodiae_C368-T07_good_114.170
SRR6049658Rhizomagastrodiae_C368-T04_good_112.610
SRR6049659Rhizomagastrodiae_C368-T04_good_111.980
SRR6049660Rhizomagastrodiae_C368-T01_good_117.010
SRR6049661Rhizomagastrodiae_C368-T04_good_113.710
SRR6049662Rhizomagastrodiae_C368-T01_good_118.960
SRR6049663Rhizomagastrodiae_C368-T01_good_117.090
SRR6049664Rhizomagastrodiae_C368-T10_good_118.430
SRR6049665Rhizomagastrodiae_C368-T10_good_118.430
SRP279888GastroGastrodia elata tuber 18.75
JuvenJuvenile tuber20.52
Mother_GastroMother tuber of Gastrodia elata 11.24
Mother_JuvenMother tuber of Juvenile 11.92