Gene detail

Detail information of GWHGAAEX005393/evm.TU.scaffold_163.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|85374896\|ref\|YP_458958.1\|	8.00E-47	oxidoreductase, short-chain dehydrogenase/reductas [Erythrobacter litoralis HTCC2594]
KOG	KOG1208	2.00E-154	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
nr	gi\|743777679\|ref\|XP_010919277.1\|	2.45E-169	PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Elaeis guineensis]
Swissprot	tr\|A2RVM0\|TIC32_ARATH	3.00E-86	Short-chain dehydrogenase TIC 32, chloroplastic
trEMBL	tr\|A0A022R3X5\|A0A022R3X5_ERYGU	3.00E-165	Uncharacterized protein {ECO:0000313\|EMBL:EYU33505.1}
TAIR	AT4G24050	2.00E-154	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000159	88556	90457	+

Transcript Sequence
>GWHTAAEX005393 ATGCTAGAGACGGTGAAGTACCTACTCGGCTCAGCCGGGAGAAGCGGCTTTGGATCCAAGTCGACTGCAGAGGACGTCACCAGAGCATCGCCGGACCTCCGATCAATCACCGCCATCATCACCGGAGCGACGTCAGGGATCGGCGAGGAGACAGCGCGGGTGCTGGCGAAGCGTGGAGCCAGGCTTGTGATTCCGGCCAGAAGCCTAAAAAAGGCGCAAGAAATTAAGGATCGCATCACCGAAGAATTCCCCGGATCTGATATCATCGTGCTTCCTCTGGATCTCAGTTCTCTTTCCTCTGTACGAGCCTTCGTGTCCAGATTCCTTTCTCTTCAGCTCCCGCTCAATCTACTAATAAATAACGCGGGAAAATTTTCACACGGTTACGGATTATCCGAAGACGGGATTGAGATGACCTTCGCCACAAATTATCTCGGCCACTTCTTATTGACGAAGCTTCTGATGGAGAAAATGGCGGAGACGGCGAGAATTACAGGAATCGAAGGCCGGATCGTCAACGTCTCCTCCGGCATCCATGCCTGGTTTTCAGGCGACGGTCTCCGTTATCTCGATTTCATCACCTGCAAGAAAATACCTTACGACGCCACACGGGTGTACGCGCTCTCCAAGCTCGCCAACGTCCTTCACACCATGGAGCTCGCAAAGAAGCTCGAGGTAATCAAGATTCTGAATCCCGATAAGAATCCGCCATTCCTTTCGAGACTGATTCTTGTATATGTGATTCAGGAAACCAGAGCGAACGTTAGGGCGAACTGTGTTCATCCTGGCATTGTGCGAACCCGCCTCACCCGCGACCGCGAAGGTTTCCTCACAGATCTCGTCTTTTTCATGGCGTCAAAGCTTCTGAAGACGATTCCTCAGGCGGCGGCGACGACGTGCTACGTTGCTACGAGCTCAGCTGTTGCTGGAATGACAGGGAAATACTTTGCGGACTGTAACTTGGCTTCGCCTTCCTCTGCCGCTGAAAGCCGGAAGGAGGCAAATCGACTGTGGTCGGCGTCAGAGAAGATGACGGCGAAGAAGCTAGAAAGATGAGCAAGTCAGTACATACATATATATATATAATATATATAAATATATATATATATATAATATATATATATATATATATATATATATTACCGAAAAGGCGCTGGTGTAGGATAAGTTTGGGAGCGGGAGCATCATACCGGAATCACTTTTTGGATGTGAATAGTGCTGCTGCAGCCTGTGTAGAGCCGACGCGAGGCTTCGAGATTTTTCATAGTACGTGCGAACGGCGAAGGCGTATACTTCTCGACTCTCAACCCTAAACTCTCAACTCTCTCAACTCTCAACTCTCAACTCGCTTAATGATTGAGATTTCTATTAGATTTTAAAAAGGTCAAAAAGATATATATATTTTAAATGTCATTAGATGCAAGAAGAATAAAGTGCTATTTTATTTATTATTAGTTTTAATTGGTGAAG

Network for GWHGAAEX005393

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.24	adh_short	37	177	9.00E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.510
SRP064423	SRR2545915	Juvenile tuber	15.150
SRP108465	SRR5643513	five period of Gastrodia elata	8.870
	SRR5643514	five period of Gastrodia elata	4.780
	SRR5643515	five period of Gastrodia elata	4.870
	SRR5643524	five period of Gastrodia elata	6.230
	SRR5643525	five period of Gastrodia elata	2.280
	SRR5643528	five period of Gastrodia elata	5.380
	SRR5643658	five period of Gastrodia elata	2.300
	SRR5643659	five period of Gastrodia elata	11.890
	SRR5643660	five period of Gastrodia elata	11.890
	SRR5643661	five period of Gastrodia elata	10.530
	SRR5643662	five period of Gastrodia elata	12.690
	SRR5643663	five period of Gastrodia elata	10.900
	SRR5643664	five period of Gastrodia elata	13.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.370
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.420
SRP279888	Gastro	Gastrodia elata tuber	4.48
	Juven	Juvenile tuber	2.24
	Mother_Gastro	Mother tuber of Gastrodia elata	4.69
	Mother_Juven	Mother tuber of Juvenile	1.20