Detail information of GWHGAAEX005394/evm.TU.scaffold_163.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|192359128|ref|YP_001980808.1| | 4.00E-79 | trehalase tre37A [Cellvibrio japonicus Ueda107] |
| KOG | KOG0602 | 0 | Neutral trehalase |
| nr | gi|743777675|ref|XP_010919275.1| | 0 | PREDICTED: probable trehalase [Elaeis guineensis] |
| Swissprot | tr|Q9FWC1|TRE_ORYSJ | 0 | Probable trehalase |
| trEMBL | tr|M0SRU6|M0SRU6_MUSAM | 0 | Trehalase {ECO:0000256|RuleBase:RU361180} |
| TAIR | AT4G24040 | 0 | trehalase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000159 | 99259 | 113920 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005394
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01204.17 | Trehalase | 42 | 559 | 1.20E-163 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH37 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01194 | TREH, treA, treF | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005991 | Biological Process | trehalose metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004555 | Molecular Function | alpha,alpha-trehalase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 40.450 |
| SRR2545915 | Juvenile tuber | 46.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.920 |
| SRR5643514 | five period of Gastrodia elata | 23.810 | |
| SRR5643515 | five period of Gastrodia elata | 19.440 | |
| SRR5643524 | five period of Gastrodia elata | 20.620 | |
| SRR5643525 | five period of Gastrodia elata | 17.780 | |
| SRR5643528 | five period of Gastrodia elata | 10.800 | |
| SRR5643658 | five period of Gastrodia elata | 15.950 | |
| SRR5643659 | five period of Gastrodia elata | 29.830 | |
| SRR5643660 | five period of Gastrodia elata | 27.520 | |
| SRR5643661 | five period of Gastrodia elata | 27.440 | |
| SRR5643662 | five period of Gastrodia elata | 20.470 | |
| SRR5643663 | five period of Gastrodia elata | 25.490 | |
| SRR5643664 | five period of Gastrodia elata | 24.850 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 46.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 44.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.34 |
| Juven | Juvenile tuber | 33.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.53 | |
| Mother_Juven | Mother tuber of Juvenile | 31.45 |