Gene detail

Detail information of GWHGAAEX005399/evm.TU.scaffold_163.9

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|404215922\|ref\|YP_006670117.1\|	5.00E-13	Superfamily II DNA/RNA helicase, SNF2 family [Gordonia sp. KTR9]
KOG	KOG0383	3.00E-41	Predicted helicase
nr	gi\|694996079\|ref\|XP_009392108.1\|	0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103978134 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9M658\|MOM1_ARATH	4.00E-86	Helicase protein MOM1
trEMBL	tr\|J3MAH4\|J3MAH4_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB06G10180.1}
TAIR	HS4557451	3.00E-41	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000159	142325	213160	-

Transcript Sequence
>GWHTAAEX005399 CTTAATTTATCGCGATCGCTAAAATCTCGGCCGAATGCCTTCCAGGCTGTTCGCCTTCCGCGCTTCTTCGTAAACTGCTGAACGCCGCACTCATCGCCGGCGCAACCCGGAACTTAGAAATCACCGAGGGGCATCTTTTGCACCTAGTTTTTTTTTTTGTCGTGCATGTCTTGCTTTTCTATTTGATGATATAAAGTGAGAGCAGGCGAAGGAGCTCAACTCAAATTAGAGAGATAAGCTCTTATAGAAAGCTTCAAATACTTCTTTTCACAAAATTCTGTGATGATTTCAAATTCTTATCAGTCTCAGAAGGTGGCTAAGAATATTCTAACATGTCCATGAAGATGAAAGTGCGTCAAAGCATAGCTCTAGAGAAAATAATTACATAAATGTACCATCTTTAGGCAATCTAGAAAGCTCCGAAAGGGAAGTACCTGAAAGGCTTAAAGCCTTTTGAGAAGTCCAAAAGAAAGAGGGCCTTCAAGTAGCTATATTAATTTAGTGAAAAGTGAAAATGACTTTGTAACTAAGAATACAAAAGAGGATTTAAGGATCAGATCTTCAAGTACCGCTAGCAGGCCACCAAGGATCGGATTTCTGAATACCAGTGATAACTCGAACAAGAGAATAGGGTCACTGATGCCGAAGAGAAAAGAGGATGTCTGGCAATTTGCTTCAAGTACTGAGAATTCCATTAGGAATTCAAGTCCTAAAGCTAAACGGCAAAAGGAAGATGATCAAGGCAAGACTTCTGGAGACACAGATAGCGAAAGCTATAACAGTTGTCAGAATACAATCAGAAAGCTTATACCTCTTTCGAGATACAAAAAATTGTTTAAAAAACCTGCAAAAGCTTGTAGAAATCAAGATGGCAGTGGTAATTGCATTCAAGAGAAAACTCCGCTGCAAGTGAATTTTGAAGCTAGTATTTTCATGGATGTGGTGGAGGATGGAGATTTGATTCGCACAAATAAGGGTGCAAAATATGACAGAGGGTTGTGTTTTGCAACTAATGGGTCGTTGGAGAATAAGGAGCTGAAATATACAAAGCTGTTAGATGCTACCTTGGATGCAACTACTTCTACTCTTAAGCAAGACCATAAGGCGAAGTTCAATGGTATAATGCATGGAAAAATGATTCATAGTTTGAATTCTTACAATTTTCCAAAACCATCTGGAGAGGAAATAGATATACATGGCCCTTGCACGATGAAGAGTGAGCCACCTCCTTCCATGTTACAGGTAAAGAAAGCTTCTTTTTGTAAAATATCAAAACTACCTGATGGGTGTCCTACTGAAGTTGATAATGATCATTTAAGTTCTGTTAACTGCATTCGTGGGTTTTGGCACAAGTCTCTGAATGCTGTGCTCATTGATAATCAGGAGCGTATCTCAAAATCCATCCTATTTGTTCTTTCTTTGCAATCCCATGCATGCCGACCTTCTCTTATCATCACATCAGATTCTCTTGCCCAATGGCATGACAATTTTCTCCGCTTGGCACCATCTGCAAATGTAATTATATATCTGGGTGATGATGCTAGGAAGATGATTCAAAGGTTTGAATTTTATGAGGAAAGCGGTGGCCTAATGTTTCAAGTACTTTTGGCAGATCCTAAGGCAATTGTTAATGATTTGGTTGATATAGCTCGCATCAAATGGGAATCAATAATTGTTGATGATTGTCAGAATTCAGTGATGATCGGATATCTTAAACGGCTAAATACTCTTAGCACTGATTTTAAACTGCTACTTCTTAATGGCCAACTAAAGGATAGCCTTTCTGATTACCTTGACCTACTCGCCTTTCTCAACCCTGGAGAAACGATAGATGATAGTTTAGTTAGCTTGGAGGCCAATATTAATGAGCCTCCTGGTGCACTTCTTAGGGCAAAGAAGAAATTGGCGTCCCATATTGCTTACAAGTGTAAATTTGAGTCATCTAAGTTCTTCGAGTTCTGGGTCCCAGTTCCACTCTCAAATGTTCAATTGGAGCAATACTGCTCCACTCTTGTTTCAAATACAACTGCTCTTCGTTCAAATTTAAGAACCGATGTTGTTGAAGTTCTTCATCGTATCCTCATTACTGCTAAGAAGTGCTGTGACCATCCTTACTTAGTTGACGGGAAACTCCAAGATTTAGTAACCAAAAGTCTTGAAGGCGCTGAGTTTTTGAATGCTGAAGTATGTGCAAGTGGTAAACTGTACTTGCTTGAAAGAATTCTTCAGGAGCTCAAGAGTCTTGGACTAAGGGCGGTAATTCTATTCCAGTCTTTAGGTGGATCTGGAAATATTTCACTTGGTGATATTTTAAATGTTTTTCTCCAACAACGATTTGGTGCTGATGCATATGAGTGTATTGAGAGCGGGTTGGTCATAAAAAAAAAGGTTGATGCTTTGAAGAAGTTCAATAACAAGGAAACAGGGAGATTTGTGCTTCTTATTGAAAAGCGTGCTTGCCTTTCAAGTGTTAAGCTCCATTCAGTTGATGCAATTATTCTATTTAATAGTGATTGGAATCCATTGACTGACATAAAATCATTACAAAGATTAAGTATAACATCACAGCATAGTTGCATCAAGCTTTTTCGATTTTATACACCTTATACTATAGAAGAGAAACTTCTTATGCTCTCAAAACAAGGTACCCATCTTGAGAGCAACGTTGAGAGCATAAGCCGTAATATTATTCATTCATTGCTTGGTTGGGGTGCTTCTTATCTGTTTCAAAAGCTTGATCAGCTGCACTGTAGTGCCAGTTCAACTTTAATTTGTGAGCCTTCATTTGATAAATTATGTTTGAATGATGTCATTTTGGAAATTCTTACTCAACTTCCCGGTGAAAATGAAACAAGCAGAGCTGTGCCTTGCTCTTTTCTCATAAAGGCACGCTCGAGTGGAGGGAAATATACAAGAAATATTGTCCTGAATGGTGAAAAGGAAGGCATGTCTGTACCTGATAAAGATCTGCCCAGTTTCTGGTCAGGGTTGTTGGAGGGCAAACGTCCTAGGTGGATCTATATATCTGAGAGTTCACAGAGGGTTCGCAAAAGGATTCAGAATACAAACGAAATAGTTCTTAATGCTGTAGAGGGTGATGAAGTTAAAAACAAGCGTCTGAAAATTAAAAGCCAGTCTGTAAAGCCTGTCGTGTCCAAAGTTTTTCAAGAAATGGAGGATCCGCCTAAAGATACTAACAAATCTTCCAAGCTTGAATGTGATGGAAGGGAGCAAAAGCTTAACGAACAAAAGGACCTTCTTAAGTTGCTTAAGCCAGAATTGTCAGAATTATGTGACATTTTTGGGCTGCCGGAATCTGTAAAGGGCGTGGCTCAAGAATTTCTTGGCTATATTATGAATAATCATGAAGTGAGTATTGATCAGGCTACTGTGTTGCAGGCCTTGAAGATTTCTCTGTGTTGGCAAGCAGCATCAATGTTAAAGCACAACTTGGATCACGTGGGAACTCTTTTACTTGCAAAAACAAATTTGAAATTTGAATGTACTGAAGCAGATTCTATTTCAGTTAATTCAAAGTTGCAGATATTGAAGGAAAAGTTCTTACACAATCATGCTGCATTGGAAAAATTGATCGGACAAAACATTCCAAATAATCAGTTACCTCTCTCAAAATCAGCAGTTGTTGGAAGAGAACCTCTTGATAGGAGGGCTATGAAATTAACCGCGAGTGACAAAATACCTTCAGGAGTGAACAATGGGTTTCATGTGGATTGCAAGTCTTATGAACAACAAATTTTGCTTAAAAATAATAACATTATCGGTGAAACCCCAGGAAACTGTCAGATGGACAGTTGTTTAATGAAAGAAAATCATTATAAAAACCAAGTTGATTCTACTGTTGAAGTTTTTTTGAAAAGATCAAAAGATATTGTTCAAAAGCAGCAAGCTGAAGTTTCAGAGTTTGAAAAACAGATGCATGAAGAGAGACAGATGTTGGAAAAGATACATGATCTTGATTTGGAACTTATTCGCTGTATACACATTGATTGGATTGTTCGTAATGGAAAAACAAATGCATTAACTTAGGAGTTCTCTGCTAAGATGGACAGGTTTGATCAGCAATACAAAAAACAAAAGCAAAAACTTATGTCCATACAGCTTGAAATGCGTAATAAGGAACAAGAACTAAAGTGTACCTGGGTGTATAAGGCTAAAACTAATAATAAGCTAAATGAATCCTTGGATGATGTTCCTAGGCTTGAGACTGAATTCAGGCTAGAAACATTTTTGGATGAAAGTAATACTGAACGCCCATTTTTAAATTCTGAACGGTCATCTGGTGAAAGTAATACTGAATCAGAAGAATGTTTTGAAGTTCCATCTAATATTCTCAATGATCGGGAGGAGGATGTTAGTCTAGGACATGGCACACTTGCTTCTTTCACATCTATTACGGAAAATTATTTGGATCAAATAGTGCAAAACAGGATTTCTGTTGAATTGTCAGTTCTACCAGAGCTTCAAGGTGCCCTGCCCATAGATTCTGGGAATTTAGCTCTTCAAGCTGAAGTCTTCAAACCTGCTGATAAAAACAGTAATTTGTATGCCTCACATCTCAAATCTGTAAATTTTTCTGGTGGGACAAACACTGGATCAAAAGAATGCCCAAAAGCTACATCAAATACCTTAAATGAACAGGAGGAAAATGCTAAATTGAGAGATGATACATCTTCTACCTCGTCTGCTACGATAAATGATTTGGAACAAATTGTGCAAAGCAGTATACCTGAATCATCAATTCTACCTGTGGTGGTAGGAGGATTGGCCATAGATTCTGGGTTTTCAGCTCCTCCAACTGAATCCTCGAACCCAATAAGTAGCAAACCTGTTGATAAGAGAAAAAATTCTGATTCCACAATCTCTAATTCTCTACACTATTCTGGTGAGGCAAACACTGGTTCAAAAAAACACTTTGAAATTCCGTTAAATACTTTGAATGAACTGGAGGACAATGTTAGATCTGGAGATGACGCTCTGGTTTCATCCACGCCTGTTATAGTG

Network for GWHGAAEX005399

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX005399
MPKRKEDVWQFASSTENSIRNSSPKAKRQKEDDQGKTSGDTDSESYNSCQNTIRKLIPLSRYKKLFKKPAKACRNQDGSGNCIQEKTPLQVNFEASIFMDVVEDGDLIRTNKGAKYDRGLCFATNGSLENKELKYTKLLDATLDATTSTLKQDHKAKFNGIMHGKMIHSLNSYNFPKPSGEEIDIHGPCTMKSEPPPSMLQVKKASFCKISKLPDGCPTEVDNDHLSSVNCIRGFWHKSLNAVLIDNQERISKSILFVLSLQSHACRPSLIITSDSLAQWHDNFLRLAPSANVIIYLGDDARKMIQRFEFYEESGGLMFQVLLADPKAIVNDLVDIARIKWESIIVDDCQNSVMIGYLKRLNTLSTDFKLLLLNGQLKDSLSDYLDLLAFLNPGETIDDSLVSLEANINEPPGALLRAKKKLASHIAYKCKFESSKFFEFWVPVPLSNVQLEQYCSTLVSNTTALRSNLRTDVVEVLHRILITAKKCCDHPYLVDGKLQDLVTKSLEGAEFLNAEVCASGKLYLLERILQELKSLGLRAVILFQSLGGSGNISLGDILNVFLQQRFGADAYECIESGLVIKKKVDALKKFNNKETGRFVLLIEKRACLSSVKLHSVDAIILFNSDWNPLTDIKSLQRLSITSQHSCIKLFRFYTPYTIEEKLLMLSKQGTHLESNVESISRNIIHSLLGWGASYLFQKLDQLHCSASSTLICEPSFDKLCLNDVILEILTQLPGENETSRAVPCSFLIKARSSGGKYTRNIVLNGEKEGMSVPDKDLPSFWSGLLEGKRPRWIYISESSQRVRKRIQNTNEIVLNAVEGDEVKNKRLKIKSQSVKPVVSKVFQEMEDPPKDTNKSSKLECDGREQKLNEQKDLLKLLKPELSELCDIFGLPESVKGVAQEFLGYIMNNHEVSIDQATVLQALKISLCWQAASMLKHNLDHVGTLLLAKTNLKFECTEADSISVNSKLQILKEKFLHNHAALEKLIGQNIPNNQLPLSKSAVVGREPLDRRAMKLTASDKIPSGVNNGFHVDCKSYEQQILLKNNNIIGETPGNCQMDSCLMKENHYKNQVDSTVEVFLKRSKDIVQKQQAEVSEFEKQMHEERQMLEKIHDLDLELIRCIHIDWIVRNGKTNALT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.250
SRP064423	SRR2545915	Juvenile tuber	10.440
SRP108465	SRR5643513	five period of Gastrodia elata	3.950
	SRR5643514	five period of Gastrodia elata	5.520
	SRR5643515	five period of Gastrodia elata	5.250
	SRR5643524	five period of Gastrodia elata	5.830
	SRR5643525	five period of Gastrodia elata	5.570
	SRR5643528	five period of Gastrodia elata	4.660
	SRR5643658	five period of Gastrodia elata	5.070
	SRR5643659	five period of Gastrodia elata	5.950
	SRR5643660	five period of Gastrodia elata	6.150
	SRR5643661	five period of Gastrodia elata	4.710
	SRR5643662	five period of Gastrodia elata	5.390
	SRR5643663	five period of Gastrodia elata	5.670
	SRR5643664	five period of Gastrodia elata	6.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.110
SRP279888	Gastro	Gastrodia elata tuber	6.28
	Juven	Juvenile tuber	6.72
	Mother_Gastro	Mother tuber of Gastrodia elata	4.78
	Mother_Juven	Mother tuber of Juvenile	8.60