Detail information of GWHGAAEX005405/evm.TU.scaffold_163.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521460593|ref|YP_008147268.1| | 9.00E-31 | hypothetical protein SCE1572_04045 [Sorangium cellulosum So0157-2] |
| nr | gi|729332467|ref|XP_010537151.1| | 3.83E-127 | PREDICTED: beta-carotene 3-hydroxylase 1, chloroplastic-like [Tarenaya hassleriana] |
| Swissprot | tr|Q9SZZ8|BCH1_ARATH | 2.00E-121 | Beta-carotene 3-hydroxylase 1, chloroplastic (Precursor) |
| trEMBL | tr|W1NMJ3|W1NMJ3_AMBTC | 2.00E-127 | Uncharacterized protein {ECO:0000313|EMBL:ERM96490.1} |
| TAIR | AT4G25700 | 7.00E-121 | beta-hydroxylase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000159 | 438511 | 441716 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005405
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04116.12 | FA_hydroxylase | 124 | 252 | 1.30E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15746 | crtZ | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Carotenoid biosynthesis | map00906 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0008610 | Biological Process | lipid biosynthetic process |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.680 |
| SRR2545915 | Juvenile tuber | 6.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.050 |
| SRR5643514 | five period of Gastrodia elata | 12.780 | |
| SRR5643515 | five period of Gastrodia elata | 12.510 | |
| SRR5643524 | five period of Gastrodia elata | 9.990 | |
| SRR5643525 | five period of Gastrodia elata | 16.940 | |
| SRR5643528 | five period of Gastrodia elata | 26.080 | |
| SRR5643658 | five period of Gastrodia elata | 12.650 | |
| SRR5643659 | five period of Gastrodia elata | 7.780 | |
| SRR5643660 | five period of Gastrodia elata | 6.450 | |
| SRR5643661 | five period of Gastrodia elata | 8.960 | |
| SRR5643662 | five period of Gastrodia elata | 16.010 | |
| SRR5643663 | five period of Gastrodia elata | 13.180 | |
| SRR5643664 | five period of Gastrodia elata | 15.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 40.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 51.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.05 |
| Juven | Juvenile tuber | 93.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.60 | |
| Mother_Juven | Mother tuber of Juvenile | 40.60 |