Detail information of GWHGAAEX005406/evm.TU.scaffold_163.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|328952775|ref|YP_004370109.1|2.00E-08RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM 11109]
nrgi|672167908|ref|XP_008803933.1|5.80E-65PREDICTED: probable RNA-binding protein 18 [Phoenix dactylifera]
Swissprottr|Q9CAE4|U1131_ARATH6.00E-10U11/U12 small nuclear ribonucleoprotein 31 kDa protein
trEMBLtr|B9RIU0|B9RIU0_RICCO1.00E-53Putative uncharacterized protein {ECO:0000313|EMBL:EEF49062.1}
TAIRHS149164618.00E-22Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000159443113449513-
Transcript Sequence

Network for GWHGAAEX005406

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_110823.30E-14
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.670
SRR2545915Juvenile tuber24.490
SRP108465SRR5643513five period of Gastrodia elata12.320
SRR5643514five period of Gastrodia elata11.000
SRR5643515five period of Gastrodia elata10.400
SRR5643524five period of Gastrodia elata8.860
SRR5643525five period of Gastrodia elata16.520
SRR5643528five period of Gastrodia elata20.940
SRR5643658five period of Gastrodia elata15.780
SRR5643659five period of Gastrodia elata15.130
SRR5643660five period of Gastrodia elata15.770
SRR5643661five period of Gastrodia elata13.800
SRR5643662five period of Gastrodia elata12.190
SRR5643663five period of Gastrodia elata11.710
SRR5643664five period of Gastrodia elata16.660
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.930
SRR6049655Rhizomagastrodiae_C368-T10_good_15.180
SRR6049656Rhizomagastrodiae_C368-T07_good_17.400
SRR6049657Rhizomagastrodiae_C368-T07_good_17.090
SRR6049658Rhizomagastrodiae_C368-T04_good_15.690
SRR6049659Rhizomagastrodiae_C368-T04_good_14.820
SRR6049660Rhizomagastrodiae_C368-T01_good_15.380
SRR6049661Rhizomagastrodiae_C368-T04_good_12.940
SRR6049662Rhizomagastrodiae_C368-T01_good_18.170
SRR6049663Rhizomagastrodiae_C368-T01_good_14.790
SRR6049664Rhizomagastrodiae_C368-T10_good_17.990
SRR6049665Rhizomagastrodiae_C368-T10_good_17.990
SRP279888GastroGastrodia elata tuber 9.05
JuvenJuvenile tuber12.57
Mother_GastroMother tuber of Gastrodia elata 6.98
Mother_JuvenMother tuber of Juvenile 6.94