Detail information of GWHGAAEX005408/evm.TU.scaffold_163.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 8.00E-12 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| nr | gi|743859433|ref|XP_011030594.1| | 2.22E-171 | PREDICTED: lysM domain receptor-like kinase 4 [Populus euphratica] |
| Swissprot | tr|O64825|LYK4_ARATH | 7.00E-55 | LysM domain receptor-like kinase 4 (Precursor) |
| trEMBL | tr|B9HUP2|B9HUP2_POPTR | 4.00E-169 | Uncharacterized protein {ECO:0000313|EMBL:EEF01911.2} |
| TAIR | AT2G23770 | 2.00E-54 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000159 | 454766 | 458291 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005408
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01476.19 | LysM | 177 | 217 | 0.01 |
| PF00069.24 | Pkinase | 339 | 563 | 9.70E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LysM |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.760 |
| SRR2545915 | Juvenile tuber | 2.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.180 |
| SRR5643514 | five period of Gastrodia elata | 6.800 | |
| SRR5643515 | five period of Gastrodia elata | 8.570 | |
| SRR5643524 | five period of Gastrodia elata | 11.180 | |
| SRR5643525 | five period of Gastrodia elata | 0.460 | |
| SRR5643528 | five period of Gastrodia elata | 0.580 | |
| SRR5643658 | five period of Gastrodia elata | 0.340 | |
| SRR5643659 | five period of Gastrodia elata | 12.160 | |
| SRR5643660 | five period of Gastrodia elata | 10.820 | |
| SRR5643661 | five period of Gastrodia elata | 10.080 | |
| SRR5643662 | five period of Gastrodia elata | 2.360 | |
| SRR5643663 | five period of Gastrodia elata | 2.110 | |
| SRR5643664 | five period of Gastrodia elata | 1.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.36 |
| Juven | Juvenile tuber | 14.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.57 | |
| Mother_Juven | Mother tuber of Juvenile | 5.12 |