Gene detail

Detail information of GWHGAAEX005410/evm.TU.scaffold_163.21

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|219849512\|ref\|YP_002463945.1\|	6.00E-75	riboflavin synthase subunit alpha [Chloroflexus aggregans DSM 9485]
KOG	KOG3310	3.00E-86	Riboflavin synthase alpha chain
nr	gi\|672112486\|ref\|XP_008806202.1\|	2.03E-116	PREDICTED: riboflavin synthase [Phoenix dactylifera]
trEMBL	tr\|W9STD1\|W9STD1_9ROSA	1.00E-101	Riboflavin synthase alpha chain {ECO:0000313\|EMBL:EXC25510.1}
TAIR	AT2G20690	3.00E-86	lumazine-binding family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000159	477725	479573	-

Transcript Sequence
>GWHTAAEX005410 ACTCGAAAAATTTTATCTCGATTAGAAAATTAATGGAGCTTCTTCTTGTTAGACTATGAAATCTCCTGCTGCATGAGATGAGCCTACCTATCAGAGAAAAGAAAGCAAAGGCAAGCCCAGAATAAAAAAGTGCCGCCCCTGGAAGACGTGCCTGGAAGCAGCGAAAATGCTTGAATGTTCATTGAATTGAATGTGAAGTAATAATATTACGGAGGAGCTGGAAAAAGTTTCATTTTTTCTTCGGCTCTGACACCACCTGTGATTTTCCGAGACTGTGGCTGAATCCTCACATTATTTAAGCGAAGAAAAGCGCAGATCAGCATCTTCATCTCCATCTCCACTTTAGCAGCCCTGAGAATCGTCGTATTTTGTTAAAGATGGCCACGACAGTTTCCTTTTGTGCCTCTCTTTTCTCTCTCAAGCACAGCAAATCTCTCCAGCCTTCCGATAACGGCCGCAGCATCCCGACCCTCCTCTCCAAGTCATTCAGATTCCCAACCAAAATCCATCTCAAATTCCAACCCTCCCGTAATCTCAAGCACAAGAGTTTCACAATCAAGTGCCTTTTCACTGGAATCGTAGAGGAGGTGGGCCGAGTCGAGCACTCGGACACTAACCTAGAGGGCGGCTTCCAACTGCGAATTGCAGCAAAGACCGTCATCGGAGACGTTCAACTCGGCCACAGCATCTCCGTGAACGGTGCGTGTCTCACTGTCTCGGATTTTGATCCCGTTGAGTCGCATTTTTCCGTCGGGCTCTCAATGGAAACCCTCCGAAGAACTTGTATAGGTGAACTCGGCCCCGGCTCTCCCGTCAATCTAGAGAGGGCGCTGCAGCCGATTTCTAGGATGGGCGGCCACTTCGTGCAGGGCCACGTTGACGGGACTGGTGAGATCGTGAAGTTTGAGCCCGAGGGCGATTCTCTGTGGGTGAAGATTAAGACATCACCGGAGTTGCTCCGCTATATTGTGCCCAAGGGATTTATAACCGTGGACGGCGCGAGCTTGACGGTAGTTAGTGTTTTTGATGAAGAAAATTGCTTTGATTTCATGCTGGTGGCTTACACGCAGCAGAAGGTGGTCATTCCTTTGAAGAATGTTGGGGATAAGGTTAATTTGGAGGTGGATATACTTGGGAAGTATGTGGAGAAGCTGCTAAGGAGTGGGATTGGATCTGGACTTGCTGTGGAATCTTCCTGAGTTTTAATGATAGGACACTCAGATTGGTGTAGGCTTTTATATTTCTTAAAGTTTGAAGATTATTGCTGAGTTCAAGTTAACGCTTTTGCATCCGTATTACTATAATTGCCAACTTTTTCTTTGGGGTGTTTTGCAAACCTCTGTGATTGGTTACAAGAGGGGTCATTTTCTATATTTATGTGTTTGGTTAGATCAGAAATCAATATTTTTAAATTCACATGCATCCAAGTGTAAAAGGAGTTAGTTTTCACTGCAAGGGAATGGAAGTGAAATAATTACTTAGTTTTCCCATGTGCTCTAATAATACATTAATGGCTATGGCTGTGCTTTGATTAGCTTCCATAATGTCCGACCAATCTTTGTCTTCTTTGATGTCCTCTAACATAAATACAGAGGTCTCTTGAGTTTGATAAACTCTTATGGAGACGCTAGTGTGACTCTAACAACATCAATGTTTAACTCTTGTATAGATTAAAAACTAATTAAAATTTTTTTTATTCTCATATCAAGTTGAAATATTAAACCTCTATATTCTTAACACATCTAACTTTCTTATCTAGCAATGAGGGATCAACAAAGTTTTCTCAGATCATTGCAGACCATGGCATCTAAGCCTAAGTTGAAATTGTAGGCCTTTGTATTGAAGCTCA

Network for GWHGAAEX005410

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00677.16	Lum_binding	65	151	7.40E-19
PF00677.16	Lum_binding	164	250	1.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00793	ribE, RIB5	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Riboflavin metabolism	map00740

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.890
SRP064423	SRR2545915	Juvenile tuber	7.760
SRP108465	SRR5643513	five period of Gastrodia elata	8.820
	SRR5643514	five period of Gastrodia elata	6.650
	SRR5643515	five period of Gastrodia elata	8.390
	SRR5643524	five period of Gastrodia elata	6.970
	SRR5643525	five period of Gastrodia elata	4.090
	SRR5643528	five period of Gastrodia elata	5.040
	SRR5643658	five period of Gastrodia elata	4.050
	SRR5643659	five period of Gastrodia elata	17.940
	SRR5643660	five period of Gastrodia elata	15.030
	SRR5643661	five period of Gastrodia elata	18.010
	SRR5643662	five period of Gastrodia elata	22.000
	SRR5643663	five period of Gastrodia elata	19.400
	SRR5643664	five period of Gastrodia elata	20.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.010
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.040
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.290
SRP279888	Gastro	Gastrodia elata tuber	15.05
	Juven	Juvenile tuber	5.70
	Mother_Gastro	Mother tuber of Gastrodia elata	5.14
	Mother_Juven	Mother tuber of Juvenile	3.79