Detail information of GWHGAAEX005411/evm.TU.scaffold_163.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428306733|ref|YP_007143558.1| | 1.00E-31 | (myosin heavy-chain) kinase [Crinalium epipsammum PCC 9333] |
| KOG | KOG0305 | 0 | Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits |
| nr | gi|743777314|ref|XP_010919086.1| | 0 | PREDICTED: protein FIZZY-RELATED 1-like [Elaeis guineensis] |
| Swissprot | tr|Q8L3Z8|FZR2_ARATH | 0 | Protein FIZZY-RELATED 2 |
| trEMBL | tr|M5WFD3|M5WFD3_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ12439.1} |
| TAIR | AT4G22910 | 0 | FIZZY-related 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000159 | 484998 | 511555 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005411
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 298 | 333 | 3.10E-06 |
| PF00400.31 | WD40 | 338 | 378 | 0.0047 |
| PF00400.31 | WD40 | 427 | 463 | 5.80E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03364 | CDH1 | Ubiquitin mediated proteolysis | map04120 |
| Cell cycle | map04110 | ||
| Cell cycle - yeast | map04111 | ||
| Progesterone-mediated oocyte maturation | map04914 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.990 |
| SRR2545915 | Juvenile tuber | 8.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.400 |
| SRR5643514 | five period of Gastrodia elata | 10.540 | |
| SRR5643515 | five period of Gastrodia elata | 11.050 | |
| SRR5643524 | five period of Gastrodia elata | 10.960 | |
| SRR5643525 | five period of Gastrodia elata | 11.030 | |
| SRR5643528 | five period of Gastrodia elata | 9.640 | |
| SRR5643658 | five period of Gastrodia elata | 11.140 | |
| SRR5643659 | five period of Gastrodia elata | 12.200 | |
| SRR5643660 | five period of Gastrodia elata | 11.200 | |
| SRR5643661 | five period of Gastrodia elata | 10.490 | |
| SRR5643662 | five period of Gastrodia elata | 9.950 | |
| SRR5643663 | five period of Gastrodia elata | 10.570 | |
| SRR5643664 | five period of Gastrodia elata | 8.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.18 |
| Juven | Juvenile tuber | 15.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.55 | |
| Mother_Juven | Mother tuber of Juvenile | 20.46 |