Detail information of GWHGAAEX005413/evm.TU.scaffold_163.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG10395.00E-74Predicted E3 ubiquitin ligase
nrgi|695077296|ref|XP_009385980.1|2.31E-88PREDICTED: E3 ubiquitin-protein ligase RNF8-A-like isoform X2 [Musa acuminata subsp. malaccensis]
trEMBLtr|M0U6I4|M0U6I4_MUSAM1.00E-88Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP05220_001}
TAIRAT3G471605.00E-74RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000159558323614537-
Transcript Sequence

Network for GWHGAAEX005413

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_31471942.70E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.160
SRR2545915Juvenile tuber17.280
SRP108465SRR5643513five period of Gastrodia elata13.220
SRR5643514five period of Gastrodia elata18.910
SRR5643515five period of Gastrodia elata12.710
SRR5643524five period of Gastrodia elata17.500
SRR5643525five period of Gastrodia elata31.070
SRR5643528five period of Gastrodia elata14.820
SRR5643658five period of Gastrodia elata26.040
SRR5643659five period of Gastrodia elata16.090
SRR5643660five period of Gastrodia elata14.170
SRR5643661five period of Gastrodia elata11.920
SRR5643662five period of Gastrodia elata13.200
SRR5643663five period of Gastrodia elata19.010
SRR5643664five period of Gastrodia elata13.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.630
SRR6049655Rhizomagastrodiae_C368-T10_good_14.700
SRR6049656Rhizomagastrodiae_C368-T07_good_113.590
SRR6049657Rhizomagastrodiae_C368-T07_good_113.690
SRR6049658Rhizomagastrodiae_C368-T04_good_111.270
SRR6049659Rhizomagastrodiae_C368-T04_good_110.600
SRR6049660Rhizomagastrodiae_C368-T01_good_114.960
SRR6049661Rhizomagastrodiae_C368-T04_good_111.510
SRR6049662Rhizomagastrodiae_C368-T01_good_114.170
SRR6049663Rhizomagastrodiae_C368-T01_good_114.330
SRR6049664Rhizomagastrodiae_C368-T10_good_114.930
SRR6049665Rhizomagastrodiae_C368-T10_good_114.930
SRP279888GastroGastrodia elata tuber 13.68
JuvenJuvenile tuber16.32
Mother_GastroMother tuber of Gastrodia elata 4.83
Mother_JuvenMother tuber of Juvenile 5.43