Gene detail

Detail information of GWHGAAEX005416/evm.TU.scaffold_163.27

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2625	Uncharacterized conserved protein
nr	gi\|743776055\|ref\|XP_010918426.1\|	PREDICTED: trafficking protein particle complex subunit 13 isoform X3 [Elaeis guineensis]
trEMBL	tr\|D7UE86\|D7UE86_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI41051.3}
TAIR	AT2G47960	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000159	634228	708037	+

Transcript Sequence
>GWHTAAEX005416 ATCGTTTTTCTTCCTGAGCGGAACCGGTAATAGCTGCCGTCCCTATTCCTGTGTCGCATCTCTCTCCACTCACCGGGCCTATTGGCCTCTCTCTGAAACAAGACGAATTTCAAGCCCTAAGCCGAGGCCTCTCAGTCTCTCTCTCTCTCTCCTCTCGATTGCTACTCCCGTTGCCATCATGCACTCTTACCGACATCGGCGTTGATCCTCACCTCCTTGGCCATCTAAGGCAGGGCTGAGCCCTGTTGTACAACCGTCAATTGCTACCGTCTGCACAGTCGCAGTTGCTGTCCAAAGCCTAGACCGCTGCCACCTCGCTTCATCGAACGTCCAGCCGCTTTCTTTGCCACCCCTGGCAGGGCTGCCGGCTGGAGCTTTCTTCCTGTAGTTGAACTTCTTTTTTGGCCACAGGATCTACTCATCTTTTCATCATGTCCAACTCAATCTTCGTGAAACTCTTGCTGGCTATTACTGTCTGGTGCATAGCTTATGTCGCTGCTGCTTTCGTAGTCTCTATTCGATTTTTCACTGGTTATGGTTACACCATCATGAACTAGCTCTGCATTCTGAGCAGTAAAACTGCAGGTTTTGCTACCTTACTGGTTGCTGATGCACGTTCCTCCGTTCTTTGCCTTCTTACTGGACGGATAAGGCAGTTCTAATTTGAATATTAAAAAATTGGCATTCATGGTGAAAGGGTAAGCGAGAGAAGCATAATTGAGGTCCATCGCTGATATTGGGGAGTGCAGAATAAAGCGCTGACCTCTGCTGCGATTAGGGGCTGTTGGTGATGAATAACATTAGCCTCTGACTTCAAGAAGCCTTATCGACCTTCTGCTTAACTATCATTGCGATCACCGGCGATGTCGGATCACAGCGCCGGAAGCTCACCTTCCAACCAATCGCTCGCCTTCCGTGTGATGAGGCTTTGCCGGCCATCATTCCAGACCGAGGAAAGTATTTTGCGCATCGACCCCTTGGATCTTCTCGCCGGTGAGGATCTTTTCAAAAACTGCAACGTTTCCTCTGCCATCGTCGACCAAGCCATCGGAACTCAACCTTCATCCACTTCTGGGGAAGGAGGAGACGATTTTAGCTTCCGTGGCCGATTCCTGCTCCAGAAATCTAGTGATGCTATAGCTCTTCCTGGATTCCTTATTCTTCCCCAGTCATTTGGTTCGATATATCTGGGAGAAACCTTCTGCAGCTACATTAGCATAAACAACAGCTCCAGTTTCGAGGCAAGGGATATAATTATTAAGGCTGAAATTCAGACAGAACGACAAAGAATATCACTGTTGGATACATCTAAGTCACCAGTTGAATCTATAAGGTCCGGTGGAAGATATGATTTCATCGTGGAGCATGATGTCAAAGAATTAGGACCTCATACGCTTGTTTGCACTGCACACTACAATGATGGTGATGGGGATCGTAAATATCTTCCACAATATTTCAAGTTTAATGTTGCAAATCCCTTTTCAGTTCGAACAAAGGTTCGCACTGTGAAGGAGAGTACTTTCTTAGAAGCATGCATTGAGAACCATACAAAGTCAAACCTTTATATGGATCAAGTTGAATTTCAGCCAGCACAACATTGGAGTGCTTCAATTTTGAAAGCTGATGATTGCATTTCTGACAACGGTGTTCAGGCTAGCAAAATTTTCAGGTCACCTCTTCTTTTAAGAGCTGGAGGAATATATAATTATCTCTACCAGTTAAAGCAATCATCTCAAGGGAGTGGACAAGTTAAAGTTGGTGGAAGCAATATACTTGGTAAACTTCAGATCACATGGCACACAAATTTGGGTGAGCCAGGACGCTTGCAGACACAGCAAATTATTGGCACACCCTTTGTTCAGAAGGACATTAACTTACAAGTTGTTGCAGTGCCATCTCCCATCATTTTGCAAAGGTCATTTCAGGTAAGCTTAAAACTTACAAACCATTCAGAAAGAACAGCAGGCCCTTTTGAAGTTACATTATCGCAAGGAAGTTCTAGTTTACCAAAGGTTGTTATGATTTATGGCATCCAAAAACTGGTACTTCAGCCATTGGAGGCTTACAGTTCTACAGACTTTAGTCTGAACTTGATTGCCATTAAACTAGGTATCCAGAAGATCTTAGGAATCACAATTTATGACGTGGGAGAAGCTAGAATGTATGATCCATTACCAGATGTTGAGATTTTTGTAGATTCAGAATGAAATTTATGGATGCCAGCTTCCTGTTGATATTTTGAGGGGAATATATGATTCTTTTCCACGGTGTATATGCTACTTTCCAACATGCTGTAACTGAAATTCACTTGCAGAATAAGAATCAGCAGGCACCGCGTGCGTCATGGAGAGAGCGAGACTTTGTTTCTTCAGGTCTGCTGTATGCATTCACTGTACAAGTTCCTGTCTCAAGTTAAACCCAAGAGAGCATCCATCCAGCACCGCCCATGTTAATAAAACTTTTATTCATGCCACCTAAATCATCCAAATTTACTTGTCTAAGACCCAAAGGTTTCTATTCACATGAACAAATCACAGTGTTTATATCAATGCTAGTGCCTCACTCTTCAATCATCAAAAGAGGATTGAATGTTTTTTGTGGACCAAGGTTGACATTCATTTATAAAATCATGCCTTTGTATGTTAAGCTGTTAGCTGTTTAAAAAAGGATAGTTTATAATTAATCATTTCTTAAAATTGTAGCAGTTGAAATGTGTTGATGAGTTGCCATTTACAGACATTGATTACGGCTTCAATTCTTGTATTGCATATATGTTATTGTTGAAAAAGAAAAAATTGTTACTGTTGCAAACATTGACACGATAATTCATTAGAGCTCTTAGGACTCTTGGAG

Network for GWHGAAEX005416

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06159.12	DUF974	98	326	1.80E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.250
SRP064423	SRR2545915	Juvenile tuber	37.480
SRP108465	SRR5643513	five period of Gastrodia elata	19.640
	SRR5643514	five period of Gastrodia elata	21.780
	SRR5643515	five period of Gastrodia elata	22.960
	SRR5643524	five period of Gastrodia elata	23.290
	SRR5643525	five period of Gastrodia elata	37.880
	SRR5643528	five period of Gastrodia elata	30.870
	SRR5643658	five period of Gastrodia elata	35.090
	SRR5643659	five period of Gastrodia elata	24.220
	SRR5643660	five period of Gastrodia elata	26.240
	SRR5643661	five period of Gastrodia elata	25.550
	SRR5643662	five period of Gastrodia elata	28.510
	SRR5643663	five period of Gastrodia elata	26.290
	SRR5643664	five period of Gastrodia elata	29.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.930
SRP279888	Gastro	Gastrodia elata tuber	31.87
	Juven	Juvenile tuber	25.48
	Mother_Gastro	Mother tuber of Gastrodia elata	31.72
	Mother_Juven	Mother tuber of Juvenile	34.58