Detail information of GWHGAAEX005417/evm.TU.scaffold_163.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 8.00E-174 | FOG: PPR repeat |
| nr | gi|672181166|ref|XP_008810790.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SY02|PP301_ARATH | 2.00E-174 | Pentatricopeptide repeat-containing protein At4g02750 |
| trEMBL | tr|W5GFG7|W5GFG7_WHEAT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_6AS_A80B0526C.5} |
| TAIR | AT4G02750 | 8.00E-174 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000159 | 716447 | 719997 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005417
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 48 | 75 | 0.0011 |
| PF01535.19 | PPR | 77 | 106 | 0.00012 |
| PF01535.19 | PPR | 108 | 138 | 4.70E-05 |
| PF01535.19 | PPR | 139 | 167 | 9.10E-08 |
| PF01535.19 | PPR | 171 | 194 | 0.0013 |
| PF01535.19 | PPR | 203 | 229 | 0.017 |
| PF01535.19 | PPR | 232 | 260 | 1.60E-06 |
| PF01535.19 | PPR | 263 | 292 | 1.50E-06 |
| PF01535.19 | PPR | 295 | 321 | 8.80E-06 |
| PF01535.19 | PPR | 325 | 353 | 0.008 |
| PF01535.19 | PPR | 425 | 450 | 0.1 |
| PF01535.19 | PPR | 454 | 483 | 0.00039 |
| PF01535.19 | PPR | 489 | 516 | 0.042 |
| PF01535.19 | PPR | 597 | 620 | 1.2 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.780 |
| SRR2545915 | Juvenile tuber | 1.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.870 |
| SRR5643514 | five period of Gastrodia elata | 6.040 | |
| SRR5643515 | five period of Gastrodia elata | 3.400 | |
| SRR5643524 | five period of Gastrodia elata | 4.870 | |
| SRR5643525 | five period of Gastrodia elata | 0.230 | |
| SRR5643528 | five period of Gastrodia elata | 0.220 | |
| SRR5643658 | five period of Gastrodia elata | 2.020 | |
| SRR5643659 | five period of Gastrodia elata | 1.870 | |
| SRR5643660 | five period of Gastrodia elata | 1.570 | |
| SRR5643661 | five period of Gastrodia elata | 1.690 | |
| SRR5643662 | five period of Gastrodia elata | 2.760 | |
| SRR5643663 | five period of Gastrodia elata | 1.390 | |
| SRR5643664 | five period of Gastrodia elata | 1.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.270 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.84 |
| Juven | Juvenile tuber | 1.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.71 | |
| Mother_Juven | Mother tuber of Juvenile | 0.44 |