Detail information of GWHGAAEX005419/evm.TU.scaffold_163.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29321.00E-75E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex
nrgi|672111804|ref|XP_008802572.1|5.06E-110PREDICTED: E3 ubiquitin-protein ligase Hakai [Phoenix dactylifera]
trEMBLtr|F6HKX7|F6HKX7_VITVI1.00E-108Putative uncharacterized protein {ECO:0000313|EMBL:CCB55519.1}
TAIRAT5G011601.00E-75RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000159793404837167-
Transcript Sequence

Network for GWHGAAEX005419

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.400
SRR2545915Juvenile tuber10.570
SRP108465SRR5643513five period of Gastrodia elata25.660
SRR5643514five period of Gastrodia elata24.170
SRR5643515five period of Gastrodia elata24.340
SRR5643524five period of Gastrodia elata22.550
SRR5643525five period of Gastrodia elata18.680
SRR5643528five period of Gastrodia elata14.590
SRR5643658five period of Gastrodia elata21.300
SRR5643659five period of Gastrodia elata26.620
SRR5643660five period of Gastrodia elata26.040
SRR5643661five period of Gastrodia elata31.710
SRR5643662five period of Gastrodia elata34.540
SRR5643663five period of Gastrodia elata27.690
SRR5643664five period of Gastrodia elata31.750
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.120
SRR6049655Rhizomagastrodiae_C368-T10_good_143.420
SRR6049656Rhizomagastrodiae_C368-T07_good_121.030
SRR6049657Rhizomagastrodiae_C368-T07_good_120.760
SRR6049658Rhizomagastrodiae_C368-T04_good_115.950
SRR6049659Rhizomagastrodiae_C368-T04_good_114.730
SRR6049660Rhizomagastrodiae_C368-T01_good_118.530
SRR6049661Rhizomagastrodiae_C368-T04_good_116.440
SRR6049662Rhizomagastrodiae_C368-T01_good_119.820
SRR6049663Rhizomagastrodiae_C368-T01_good_116.750
SRR6049664Rhizomagastrodiae_C368-T10_good_122.390
SRR6049665Rhizomagastrodiae_C368-T10_good_122.390
SRP279888GastroGastrodia elata tuber 27.47
JuvenJuvenile tuber32.32
Mother_GastroMother tuber of Gastrodia elata 14.22
Mother_JuvenMother tuber of Juvenile 16.61