Gene detail

Detail information of GWHGAAEX005420/evm.TU.scaffold_163.31

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158318439\|ref\|YP_001510947.1\|	1.00E-37	serine/threonine kinase protein [Frankia sp. EAN1pec]
KOG	KOG0061	0	Transporter, ABC superfamily (Breast cancer resistance protein)
nr	gi\|743776148\|ref\|XP_010918473.1\|	0	PREDICTED: ABC transporter G family member 11-like [Elaeis guineensis]
Swissprot	tr\|Q8RXN0\|AB11G_ARATH	0	ABC transporter G family member 11
trEMBL	tr\|Q6X4V5\|Q6X4V5_GOSHI	0	ABC transporter {ECO:0000313\|EMBL:AAP80385.1}
TAIR	AT1G17840	0	white-brown complex homolog protein 11

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000159	869873	875140	-

Transcript Sequence
>GWHTAAEX005420 AGAGAAAAAACTAACTTAAAGACTACACCTTTTTCAATTCACTATATTTATATATATAGAGATATATACGTATAGATATATATTGTCGCAGTGAAGGCAGAGAGATGAAGAGCTCAGTAATGGCGGAATTAGAAGCTGGGAAGCCATCGGGCGAGGGACTGACAATCGGACGGCTGAGCCCTCTCAGCGAAACGCTTTGGAGGGAGAAGACGGACACCCAATTGCTGTGCGACCTATCGACGAGACTGACGTGGCAGGACTTAACGGTGACGGTGGCTCTCAGAAACGGCGAGACGCAAAAGGTGCTGGATGGCCTCACCGGCTACGCAGAGCCCTGTAGCTTCACCGCCCTAATGGGCCCCTCCGGCTCCGGCAAGTCTTCTATGCTCGACGCCCTCTCTGGCCGCCTCGCCTCCAACGCCTTCCTGTCAGGCGCCATTCTCCTCAACGGCAGGAAAACCAAGCTTTCCTTCGGAGCCGCGGGGTACGTGACGCAAGATGATAACTTGATGGGGACTTTGACGGTTAGGGAGACGATAATGTACTCTGCAAGGCTGCGGCTGCCTGATGAGATGGAGAGGGCGGCGAAGAAAGCGCTGGTGGAGGGGACGATAGCAGAGATGGGACTTCAGGACTGCGCTGATACTGTCATTGGGAATTGGCATCTCAGAGGGATAAGCGGGGGGGAGAAGAGGAGAGTCAGCATTGCCGTTGAGATTCTCATGAGGCCAAGGCTTCTGTTTCTCGATGAGCCTACCAGCGGCCTTGATAGTGCTTCAGCGTTCTTTGTGACGCAGACGCTGAGAGGATTGTCGAGGGATGGGCGCACTGTTATAGCTTCCATTCATCAACCGAGCAGCGAGGTGTTTGAGCTGTTTGATCAGCTTTATTTGCTTTCAGGAGGCAAAACTGTTTATTTTGGAAAGGCTGAAGAGGCATACGAGTTCTTTGCTGAAGCTGGATTCCCTTGCCCGTCACTAAGAAACCCATCGGATCATTTCCTGAGATGCATAAACTCGGATTTTGATAAAGTCAAAGCTACACTGAAGGGTTCTATGAAGCAAAGGTTCGAGAGAAGCAATGATCCTCTGGAGAAAATTACCACATCAGAAGCTGCTCGAAGGCTCATTGAATTCTACCGTCGCTCCCAGGGTTATTACACCTCAAGAGAGAAAGTGGATGAGATCTCTCGAGTTAAAGGAACGGTTTTGGATTCAGGGGGAAGTCAAGCCAGCTTCTTGATGCAATCCTATGTTTTAACGAAGCGTTCTTTTGTGAATATGACCAGAGATTTTGGTTACTACTGGCTGAGACTCGTGATTTACCTTGTCGTCACCGTCTGCATTGGAACAATATACCTGAACGTGGGAACTCTGTACAGCTCGATTCTGGCCAGAGGTGCTTGTGCTTCCTTTGTGTTTGGCTTTGTAACCTTCATGTCCATTGGGGGGTTTCCATCCTTTGTGGAAGATATGAAGGTGTTTCAAAGAGAGAGGCTGAACGGTCACTACGGGGTGGCAGCCTTTGTGATTAGCAACACACTTTCTGCAATGCCATTTTTGATATTAATAACCTTTCTGTCAGGAACTATATGCTACTTTATGGTGCAGCTTCATCCAGGATTTATGCATTACCTCTTCTTTGTGCTCTGCCTCTATGCAAGCGTTACTGTGGTCGAGAGCTTGATGATGACTATAGCCAGTGTTGTTCCCAATTTTCTTATGGGAATCATTACAGGAGCAGGTATTCAGGGGATTTTTATGCTGGTTTCGGGCTACTTTAGACTTCCAAAAGATATTCCAAAGCCCTTTTGGAAGTACCCGATGTCCTACTTAAGCTTTCATTATTGGGCGCTGCAGGGTCAATACCAAAATGATCTCAGTGGCCTGTTATTTGATGGCCAAAGCCCCTATGACTTCAAGATACCCGGCGACTACGTTCTCGAGAATGTGTTTCAGATCGACGTTCATCGATCGAAATGGTGGGATTTGTCGGTTCTCTTCTGCATGATCATTACATATCGCGTCATATTCTTCGTCATGATCAAAATTAATGAGGATTTCACCCCTTGGATCAGAGGTTACATTGCCAGGAAGAGGCTTCAGAAGAAGCAAAGCCTGAATGCTGCATTGGAGCTCGCAAATCGGACTCCCTCTCTTCGAGCCTACGTTGTCACACCGAACTCTAGTGATTCAAATTCATCCGACTTAGTTTAGGAAAACTTTTGTATACCTCATTCTCACACAGCATATGCTGTGTTAAATACTCTTTATATACACAACTAAAAGCGTCAACTATGAGTTTTTTTAATCATTCATTTAATTGGTCTCTTTATATTCTTTCTTTGTTTGGATTTGGGTGAATTTGATTATATGATTGAAATGCAATCAAGTTATAATGATAAAAACATTTTTTC

Network for GWHGAAEX005420

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	71	219	1.80E-21
PF01061.23	ABC2_membrane	381	587	1.60E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.590
SRP064423	SRR2545915	Juvenile tuber	1.540
SRP108465	SRR5643513	five period of Gastrodia elata	8.230
	SRR5643514	five period of Gastrodia elata	5.950
	SRR5643515	five period of Gastrodia elata	5.330
	SRR5643524	five period of Gastrodia elata	6.470
	SRR5643525	five period of Gastrodia elata	19.980
	SRR5643528	five period of Gastrodia elata	21.940
	SRR5643658	five period of Gastrodia elata	8.450
	SRR5643659	five period of Gastrodia elata	1.120
	SRR5643660	five period of Gastrodia elata	0.140
	SRR5643661	five period of Gastrodia elata	0.260
	SRR5643662	five period of Gastrodia elata	1.360
	SRR5643663	five period of Gastrodia elata	1.130
	SRR5643664	five period of Gastrodia elata	1.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.820
SRP279888	Gastro	Gastrodia elata tuber	2.92
	Juven	Juvenile tuber	1.18
	Mother_Gastro	Mother tuber of Gastrodia elata	2.44
	Mother_Juven	Mother tuber of Juvenile	0.99