Gene detail

Detail information of GWHGAAEX005424/evm.TU.scaffold_163.35

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|338733187\|ref\|YP_004671660.1\|	9.00E-06	hypothetical protein SNE_A12920 [Simkania negevensis Z]
KOG	KOG0800	2.00E-66	FOG: Predicted E3 ubiquitin ligase
nr	gi\|672123377\|ref\|XP_008785049.1\|	6.63E-81	PREDICTED: NEP1-interacting protein 1 [Phoenix dactylifera]
Swissprot	tr\|Q8GT75\|NIP1_ARATH	4.00E-68	NEP1-interacting protein 1
trEMBL	tr\|M0RNE7\|M0RNE7_MUSAM	2.00E-79	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P01160_001}
TAIR	AT5G66070	2.00E-66	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000159	955984	957996	-

Transcript Sequence
>GWHTAAEX005424 CAAATACATACGTTTAGTGCCGCTGCACCACATTTTCGTAAGCATGATTGAAGGAAAACGCAATTTTTTAAAAGAAAAACTGAAAACTAAAACTCAACGAACTTGACGGCCGGCTCATCACATCTCCAAGGCGCAAGTCTGCATTTATTGCGCAGTTAGCTTCCTCATTTCTTCCTCCCCATGGTTTCTTTCCTATTCTCCTTGTAAACTTAGCCAAGAAGCATATGTCTCACTGTCTCTATCTCTGCCCAACTCGCTAGACCCTTTATATATAAATATTTCAAAAAGTGATTCTTTTTGTCACAACAAGCTGCCATGGATTTATTTGTTTTATCCTCGTTTCCTCAGCCTCCTCTTTCTCATCTGGACGGCGATGATCAGAGATCCTCTCCGTCTAAGCTCGGTAAAAGGCTCATTGTTGGCATAACCACCTGCGTTTTGGCTTTGGTTGGTGCACCAATTGGCGCTGTCATAGGTGCATTGATAGGCATTCCAACAGAGACTGGGTTTTTAAGGGGCGCTGGAACTGGGGCCATTGCTGGGGCTGTCTTCTCAGTTGAGGTTGTTGAATCCTCTGTTGCTCTCTGGCGTTCCCATGAACATGGAATTTATTCAAATATTCTCTATGTGGTTGACATTTTATGCAGCCTTTTGAGTGGAAGACTTGTCCGTGAGAAGGTTGGCCGTGCACTCCAAAGAGCAGTGCAGAGTCAGTTGAGTTCCTTGGATCTTCACTATGTTGATACTATGGATATCTTTGAAACTGGCAGCAGCACTCGGGGAATGTCAAAGGAGTCTGTCGATTTGCTAGTAAAGCGCAAGATCACGTTAGAAAGCATCTTCAATTGCTTTGGAGAAAGGATAAACTGCTCTGTTTGTTTGCAGGACGTGCAAGTAGGAGAAATGGTGAGGAGTTTGCCATATTGCCAACACATGTTTCATTTGCGTTGCATTGATAGCTGGCTTATGAGGAATGGCTCTTGTCCTCTGTGCAGGAGAGAGATTTGAACTTGTTATATACTGTTGCTTCTCATTGTGTATATGCATCTTCCTTTTTTTTTATATGAAATTGAGCTTTAATAAAGTAAATATATGGCTGGTGGGAGTTGAATCATTGGTCTATCAAGAGTTCAAACCCAAGAGCTCAACTACTGAACCACAACACCATTCAAGATGCTTCTTTTTATTGTTATTATTCGTGTACAACTGCACTTCCTCTTCTTCTTTTTAGTACAACCCTGATTTATGAAAGAGACATCCTGATTAATGATACTTGTAATAAATAAATTTTCATTTTATTACATAAAATGGTAGTCTATCTTTATGTATTTAGAGTTTGAATTGCATTTCAATTATTGTTGTGAGGGTTGTGGTAAAAGAATGATTGAACCACACATCATCTAATAAAGGCATAATCAATGTAAGTTATAAGCATTATTCTAACTTGATATTAG

Network for GWHGAAEX005424

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	184	227	1.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.340
SRP064423	SRR2545915	Juvenile tuber	1.660
SRP108465	SRR5643513	five period of Gastrodia elata	5.170
	SRR5643514	five period of Gastrodia elata	6.880
	SRR5643515	five period of Gastrodia elata	4.610
	SRR5643524	five period of Gastrodia elata	7.210
	SRR5643525	five period of Gastrodia elata	33.770
	SRR5643528	five period of Gastrodia elata	17.790
	SRR5643658	five period of Gastrodia elata	27.220
	SRR5643659	five period of Gastrodia elata	3.440
	SRR5643660	five period of Gastrodia elata	2.990
	SRR5643661	five period of Gastrodia elata	4.330
	SRR5643662	five period of Gastrodia elata	4.550
	SRR5643663	five period of Gastrodia elata	3.370
	SRR5643664	five period of Gastrodia elata	12.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.960
SRP279888	Gastro	Gastrodia elata tuber	4.51
	Juven	Juvenile tuber	4.19
	Mother_Gastro	Mother tuber of Gastrodia elata	12.79
	Mother_Juven	Mother tuber of Juvenile	5.50