Detail information of GWHGAAEX005437/evm.TU.scaffold_163.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|326803896|ref|YP_004321714.1| | 1.00E-18 | putative serine/threonine-protein kinase PrkC [Aerococcus urinae ACS-120-V-Col10a] |
| KOG | KOG0666 | 0 | Cyclin C-dependent kinase CDK8 |
| nr | gi|672160483|ref|XP_008800024.1| | 0 | PREDICTED: cyclin-dependent kinase E-1-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q336M2|CDKE1_ORYSJ | 0 | Cyclin-dependent kinase E-1 |
| trEMBL | tr|M0RUS6|M0RUS6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P23460_001} |
| TAIR | AT5G63610 | 0 | cyclin-dependent kinase E;1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000159 | 1291608 | 1320345 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005437
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 29 | 336 | 4.50E-69 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CMGC_CDK-CDK8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 70.260 |
| SRR2545915 | Juvenile tuber | 53.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.440 |
| SRR5643514 | five period of Gastrodia elata | 22.530 | |
| SRR5643515 | five period of Gastrodia elata | 24.410 | |
| SRR5643524 | five period of Gastrodia elata | 23.440 | |
| SRR5643525 | five period of Gastrodia elata | 25.880 | |
| SRR5643528 | five period of Gastrodia elata | 22.780 | |
| SRR5643658 | five period of Gastrodia elata | 25.870 | |
| SRR5643659 | five period of Gastrodia elata | 30.930 | |
| SRR5643660 | five period of Gastrodia elata | 35.980 | |
| SRR5643661 | five period of Gastrodia elata | 33.550 | |
| SRR5643662 | five period of Gastrodia elata | 28.840 | |
| SRR5643663 | five period of Gastrodia elata | 29.410 | |
| SRR5643664 | five period of Gastrodia elata | 37.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 55.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 45.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 67.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 78.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 96.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 67.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 74.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 45.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 53.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 48.40 |
| Juven | Juvenile tuber | 46.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.18 | |
| Mother_Juven | Mother tuber of Juvenile | 35.49 |