Detail information of GWHGAAEX005439/evm.TU.scaffold_163.52


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307152491|ref|YP_003887875.1|4.00E-42WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
KOGKOG02670Microtubule severing protein katanin p80 subunit B (contains WD40 repeats)
nrgi|672107537|ref|XP_008776508.1|0PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Phoenix dactylifera]
Swissprottr|Q8H0T9|KTNB1_ARATH4.00E-46Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|A0A061E1Y6|A0A061E1Y6_THECC0Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000256|HAMAP-Rule:MF_03022}
TAIRAT5G234300Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015913566891394002+
Transcript Sequence

Network for GWHGAAEX005439

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD409440.0076
PF00400.31WD4052874.20E-05
PF00400.31WD40931291.90E-07
PF00400.31WD401351716.80E-11
PF00400.31WD401752131.70E-07
PF13925.5Katanin_con807248807.10E-52
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0051013Biological Processmicrotubule severing
GO:0008017Molecular Functionmicrotubule binding
GO:0005515Molecular Functionprotein binding
GO:0008352Cellular Componentkatanin complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.040
SRR2545915Juvenile tuber31.240
SRP108465SRR5643513five period of Gastrodia elata16.020
SRR5643514five period of Gastrodia elata16.750
SRR5643515five period of Gastrodia elata16.740
SRR5643524five period of Gastrodia elata18.050
SRR5643525five period of Gastrodia elata32.510
SRR5643528five period of Gastrodia elata40.000
SRR5643658five period of Gastrodia elata62.600
SRR5643659five period of Gastrodia elata16.470
SRR5643660five period of Gastrodia elata15.270
SRR5643661five period of Gastrodia elata14.710
SRR5643662five period of Gastrodia elata15.040
SRR5643663five period of Gastrodia elata16.200
SRR5643664five period of Gastrodia elata15.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.960
SRR6049655Rhizomagastrodiae_C368-T10_good_112.540
SRR6049656Rhizomagastrodiae_C368-T07_good_116.130
SRR6049657Rhizomagastrodiae_C368-T07_good_116.870
SRR6049658Rhizomagastrodiae_C368-T04_good_115.370
SRR6049659Rhizomagastrodiae_C368-T04_good_114.830
SRR6049660Rhizomagastrodiae_C368-T01_good_115.220
SRR6049661Rhizomagastrodiae_C368-T04_good_115.970
SRR6049662Rhizomagastrodiae_C368-T01_good_113.180
SRR6049663Rhizomagastrodiae_C368-T01_good_113.820
SRR6049664Rhizomagastrodiae_C368-T10_good_116.180
SRR6049665Rhizomagastrodiae_C368-T10_good_116.180
SRP279888GastroGastrodia elata tuber 22.84
JuvenJuvenile tuber25.76
Mother_GastroMother tuber of Gastrodia elata 32.60
Mother_JuvenMother tuber of Juvenile 34.63