Gene detail

Detail information of GWHGAAEX005440/evm.TU.scaffold_163.53

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743834736\|ref\|XP_010935612.1\|	7.95E-130	PREDICTED: uncharacterized protein LOC105055476 [Elaeis guineensis]
trEMBL	tr\|C5WXC5\|C5WXC5_SORBI	2.00E-118	Putative uncharacterized protein Sb01g018380 {ECO:0000313\|EMBL:EER91435.1}
TAIR	AT1G03610	1.00E-100	Protein of unknown function (DUF789)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000159	1397708	1402198	+

Transcript Sequence
>GWHTAAEX005440 CAAGTCAATTTTAACTAAAAATGATCGGAAAAAAAAAACAAAGTAGGATGCTTGCTATATACTATTAAGTTAAAGTTCTATTAGTAAAGATAGATCTCTTTTTTTTGGAACCTCGGGCTCCTCTCGCTGTGCCATTCAGACAGAAACACTTTTTTGTCTTCTTCATTCTTCTGTCCTTTGGCACTTCTATTTCTGGTTGGGCACAGAGAGAGAAGAGAGATGAGCCTTTTTTTTGTCTTCTTCGTTCCTCCCCTGCATTCGCGGCTTTCTTTTCTCTGAGAATAGAAGAAAAAAGGAACAGTCTTTATGGGCCGTGGAAGAACTGAAGAGATTGAGAAGGCTTTTTGGTAGAAATCTGTTCGCGGGGTGTGGTGGAGAGACAAGGAGTCAGCATTGATGAGTGAGATTGACGGTTTCTAAAATTAGATTAAATAGCGTGTGGGAAAACCGAACCTTTCTCTGAAATCATGTATTATTGCAGAAAAAGATTTTAGTATAGAGCTAAAGACAAACAGGGGAAGCCATAGTGTTAGAAAACTCGCTCGACAAGAAATAGGAAGAAAAGAAAAGCATGGCTTCAAAATTGAGAAGACATTCTAATCTGCAATGCTTTCTTGACAGCACCACAGCCTCGGTTGCCTCGCAATCTGTTCCTAAGCCATGCTTCAGAGATTTGAACAGTCTGTGGCAGCCAATTGGCAAGGAAGAAGTTGAATACTTCAATCTAGGAGATCTTTGGGATCAGTATAATGAATGGAGTGCTTATGGAGCAGGCGTTCCGATTTTCTTCCCGGGCGGTGAAACTGTAGCCCAATACTATGTCCCTTACCTGTCAGCCATCCAAATATACACAAGCAAATCTTTAGCTTCTCTAAGAGCTCTGGGAGAGGAAAGTGAGAGCGATTCGTGGAGCGATGATAGTGACAGCGAAAAGCTATCAAGGTCATGGGATGCTGCATCTGATGATACAATTTTTGATCAAGATGGATCGTGGCCGTCGAATCGGTTGGGTTACTTGTACTTTCAGTATATAGAATGCTCTCCTCCATGGGGAAGAATTCCACTTGTGGATAAGGTTCATGAGCTCTCGCGATGTTATCCGGGTTTAGTGTCATTCAAGAGTGCTGAACTTTCACCTGCTAGTTGGATGTCTGTTGCATGGTACCCTATCTATCATATACCTGCTTGCAAGAATGCTAAAGATCTATCTACTTCATTCCTGACTTTTCATACTATCTCTTCCTCCTTCCAAGATGACAATTCCATCAACGCCGAGAAAGACTTGACGAGTGTTTCTCCGGCGAAACGAGGGAGAAGTCCCGGTACTACTAAAAATACGAGTAAATGCAGCAGCCTTCCTCCATTTGGCCTTGCAGCCTACAAAATGCAGGGAAATCTGTGGATAAATTCTGGAACTTCGGATCATGAAAAGCTCATGACACTGTACAATGCTGCTGACTCATGGCTTAGGCAGCTGAGGGTTCATCACCATGATTTCAGCTTCTTCATCACTCACCTGTGAGCAAGAAAAATAATTGAATTGTGCATAAAAAGTTTGGTTTTTCATAAGTGCGTTTCGCTGCAGTTTCTTGGTATTTAGAAAGAAGCTTTTCTGTTGTGTATATGAGAAAAAGTTTTTCCTTTGGCA

Network for GWHGAAEX005440

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05623.11	DUF789	9	312	1.50E-99

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.220
SRP064423	SRR2545915	Juvenile tuber	3.960
SRP108465	SRR5643513	five period of Gastrodia elata	4.860
	SRR5643514	five period of Gastrodia elata	3.630
	SRR5643515	five period of Gastrodia elata	3.570
	SRR5643524	five period of Gastrodia elata	3.990
	SRR5643525	five period of Gastrodia elata	6.210
	SRR5643528	five period of Gastrodia elata	3.960
	SRR5643658	five period of Gastrodia elata	3.730
	SRR5643659	five period of Gastrodia elata	0.440
	SRR5643660	five period of Gastrodia elata	0.390
	SRR5643661	five period of Gastrodia elata	0.530
	SRR5643662	five period of Gastrodia elata	0.440
	SRR5643663	five period of Gastrodia elata	0.270
	SRR5643664	five period of Gastrodia elata	0.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.190
SRP279888	Gastro	Gastrodia elata tuber	0.73
	Juven	Juvenile tuber	6.11
	Mother_Gastro	Mother tuber of Gastrodia elata	11.86
	Mother_Juven	Mother tuber of Juvenile	11.63