Gene detail

Detail information of GWHGAAEX005442/evm.TU.scaffold_163.55

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743832178\|ref\|XP_010934907.1\|	3.61E-53	PREDICTED: uncharacterized protein LOC105054945 [Elaeis guineensis]
trEMBL	tr\|M0SN88\|M0SN88_MUSAM	3.00E-23	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P12230_001}
TAIR	AT3G49490	9.00E-09	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000159	1466414	1492752	-

Transcript Sequence
>GWHTAAEX005442 CTTCTTCTTGTTCTTGCCTTTGGTTCGTTCATCGAGCGTTAAAAAGCATGCTACGCGTCGGCGGATCGGTCAGATCCGGCGATCATGGTCGCTACGCGCCTCCCTTCGCTCCCTCTTCATCATCATCTACTTTATCGCCATTGGCGCCTCCTTTCAACGTTGATCGATTCCTTCCTGCCTTCACAAACCTTATACCTAATTCCCCTCCCCCTGCCTCCAAGAACACTCTCGCACCTTATTTTATTCCCTCGGTAGATCCGGTTTGGTCATGCCCTTCTCCAAGTTCATCGATTTTGACGAACCTAAATTCTGGATTCCGCTCCGTGGGAGGATCTCGTTGTTTTCCATCTTATTATCCGCCAGCGCCTGATTTGGTGAATGATAATATGGAGAGTGCGTCGAATTATAAGGGGTATGTGGGAGGATGGAATGGAGCGTTTGATTTGGAGGAAGGGAGGCTGGCTAGAGGTTCGATGGTGAATTCGTCTTGGATAGATTCTTTGACAAGTTGTCAGATGCCGCCTGACTTCAGGAAAAGAGGTACTGCTGAAAATTTCAGTGTCTATGAAGATTCTTTTGGTTCTTGGCATGGAGCTCATAATGAATTATCATCATACATTGGTCATGTTGGATCTGAGCTTTCAGAATGGCTTGATGACAGTCATCGGGAAATATATGTGGAGAAGAGTAGGGGACCAACTGATGGCTCCGGTGTTGCAGAAATAGACGTTACTGCATGGCCCAATCATGGTTCATCTTATTTCTCCACTTCAGAAATTAGTGCTGTGGTCAAGGATCGTGATACCATAATTCCAGGTTCTTACGATAGATATATTTCACAACTTATCTCTTGTTCAAGGGATCCATTAGTACATTATCCAGCTCAAACATCTTCTTCAAGGCAAGCTTATGCTCCATCGATTGAGAGGAATGAATCGTTGCTGACTTGTAATGTTTTGAAACATGGAAACTCTGTAATTAACCATGCAAATCTGCAAACTACAAATGATGATTATGCAGGTTACATAAATGAGATTCACAATGAGATAGGCATATATGAAAATGCTGAAGGCAAAGAGGATCTTGAAAGGATCAGCATTTCTGGCGATTTAATGCAAAACAACAGTGGAGCTTCATGTTCCTCTTTACCTGCAAAGGGTTTGTCATCAGACAACAGCTCAGTTCTAGGAGTGTCTATCGATTGCTTACAGGATGATGTAAATTGTGGTTTTAACGTGGCAAACTTGAGCTTTTGCAATACTTCTAACTTTGAAAGAAGTGCTTTTATACCTAAGGATTCCTTGCAAACCTCTGATGAATTACCTGATCATCTAATTGTTGGTGTGGATTCTCCATGCTGGAAAGGTGCTTCAGTTTCTCATCGATATTCTTTTAATTCCAATGAAATCTTAGAGCCTGTGGTTGTTAGTTTAACCAATGGTGATGATGTGGCTCAAGGTCATAATTCTTTGAAGATTCAATCTGATATAGAACAAGATGGAATTTTTGTTTGCAATGAGACTGGGAAGGATAATTTCTCAGCAACTCCAAAAAATTTGTCTCCAGTTACTGATTTTTTAGGTTCAGATATAAAGCTTGAAGATATTACAGAAAGTGAATCAAATTATATCAGGATAGAGAATGCAGCGGAAACTGAACAGCTTGATAATGGTGGAGATCATATTACTGTGTTAATTGAACAAGATAGCGTTCCACAAGGTAGTGATGATTTTGTGAGACAATCATGTCAGGCAGAAAATGTTGTTTGTGAAGCAATCTCGAGTGCTTGTGAGGCTGTACCCACGGTCAAAAGCTCACATTTTGAAGTTAACCATATACCTTCTCTAATTTGTAATGGTGAAATGAACTTGGCATCTCTTAATGTTAGTCTTCCTGCTGAGCTTAAGAAGGTTGATTTACTAGAAACTTCAAGCAATTGCTTATCGCAAGGGAAAGATGTTCATGTTTTTGTTAAGGCAATGCTTAGTTTATCAGAAGTTTTGCTATCTCATTATTGCAATAATGATGAGGCCTGGGAAGAAAGTGAGCTTAAAACTATGCAGCAAGTAATTGACAACCTTGAAGCTGTCATTCTACAATACAAAAAGAGCATCGCTGGGAGCAGTTCTCATGTTCCTCGGGCAGCAGCGGCGGCGGAGGCACAGCGCGATGGTATCAAAGAATCAACTGTGGACTCAAGCAGCAACAAGAACTCTAAGGATGCCGAGGAAAACGTGAATGCCATGAGCTCAGAAACAAGCATTGACCAGCACGATATCACGGCCAAATCTTCCAGTGCTAATCTCGAAGAATCCGACGGGGTGGTTTCGTCCTTCTCAAAGGCTCTGGAGAGCGGCTTCACGGAGGACTCCGAAGAGCATCCCAAGATACTCCTGTATAAAAATCTGTGGGTGCAGACTGAGGCTACGCTGTGTTCACTGAAGCATGACATTGCTCTCATGAAGCTAGAGATGGGAAGCCTCAAGAGCCACATCAAAGGCAAATCCCAGCTCCCGTCAAGCGGATCGTCAGAACCCGCAATGGGAACGCCGCCAAGCAAGTTTTTCGAGCACATTACAGAAAGCTGCAAAGACGATGATGAGGCCGAAAATAATCACGTGTTGAAAGAGGACAAGATTGATGCTTCGGTGTTCGCAAGATTCAGGGTTCTAAAAGACCGTGATGGGGAGGCGAGCGGGCCGCCGCCGCCTCCCAATACGGCTGCCACGAACGCTGTTGTGCCATTCCACAGCACGGGCGATTGTAAGGGCGCTTCGGATGGCTCTGTGATGCAGGCTTACTGCCATAAGAGCCATGCGAAATGGCTGTTCTCAAGTGGCAGTGACAGCCCCTCTTCCGAATGGGAGCATGTGCTCAAGGATGAGTTCACATGGTAGAGAAGCCTTTATACCTTCTTTAGAAATGGGAGCTTGCTTACTCTAAAATTTTCTCTTTGTAAATATCTATTATTTATTTATTTTTTGTCTGATGGATGGATGAATGGGGATGCTTTTTAACACATTCTAATGATACATACAAAAAAATTTATGTTTATTTAATTATTTACTTCACTTGAAGTGAACTTGAGTTTTCGACCTTAC

Network for GWHGAAEX005442

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.970
SRP064423	SRR2545915	Juvenile tuber	40.660
SRP108465	SRR5643513	five period of Gastrodia elata	30.720
	SRR5643514	five period of Gastrodia elata	32.600
	SRR5643515	five period of Gastrodia elata	30.240
	SRR5643524	five period of Gastrodia elata	30.680
	SRR5643525	five period of Gastrodia elata	27.340
	SRR5643528	five period of Gastrodia elata	27.350
	SRR5643658	five period of Gastrodia elata	31.560
	SRR5643659	five period of Gastrodia elata	25.270
	SRR5643660	five period of Gastrodia elata	22.090
	SRR5643661	five period of Gastrodia elata	21.670
	SRR5643662	five period of Gastrodia elata	23.920
	SRR5643663	five period of Gastrodia elata	23.840
	SRR5643664	five period of Gastrodia elata	22.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.290
SRP279888	Gastro	Gastrodia elata tuber	33.69
	Juven	Juvenile tuber	49.89
	Mother_Gastro	Mother tuber of Gastrodia elata	51.93
	Mother_Juven	Mother tuber of Juvenile	63.82