Detail information of GWHGAAEX005447/evm.TU.scaffold_163.61
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108760814|ref|YP_629103.1| | 3.00E-57 | 8-amino-7-oxononanoate synthase [Myxococcus xanthus DK 1622] |
| KOG | KOG1358 | 0 | Serine palmitoyltransferase |
| nr | gi|672180440|ref|XP_008810414.1| | 0 | PREDICTED: long chain base biosynthesis protein 1b-like [Phoenix dactylifera] |
| Swissprot | tr|Q6K8E7|LCB1B_ORYSJ | 0 | Long chain base biosynthesis protein 1b |
| trEMBL | tr|C5WQW4|C5WQW4_SORBI | 0 | Putative uncharacterized protein Sb01g040920 {ECO:0000313|EMBL:EER92546.1} |
| TAIR | AT4G36480 | 0 | long-chain base1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000159 | 1568962 | 1587974 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005447
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00155.20 | Aminotran_1_2 | 110 | 470 | 9.10E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00654 | SPT | Metabolic pathways | map01100 |
| Sphingolipid metabolism | map00600 | ||
| Sphingolipid signaling pathway | map04071 | ||
| Autophagy - yeast | map04138 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0030170 | Molecular Function | pyridoxal phosphate binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.060 |
| SRR2545915 | Juvenile tuber | 32.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.810 |
| SRR5643514 | five period of Gastrodia elata | 41.020 | |
| SRR5643515 | five period of Gastrodia elata | 47.330 | |
| SRR5643524 | five period of Gastrodia elata | 47.160 | |
| SRR5643525 | five period of Gastrodia elata | 35.240 | |
| SRR5643528 | five period of Gastrodia elata | 51.280 | |
| SRR5643658 | five period of Gastrodia elata | 32.290 | |
| SRR5643659 | five period of Gastrodia elata | 21.210 | |
| SRR5643660 | five period of Gastrodia elata | 19.030 | |
| SRR5643661 | five period of Gastrodia elata | 23.510 | |
| SRR5643662 | five period of Gastrodia elata | 24.030 | |
| SRR5643663 | five period of Gastrodia elata | 22.490 | |
| SRR5643664 | five period of Gastrodia elata | 18.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 38.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.82 |
| Juven | Juvenile tuber | 22.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 58.37 | |
| Mother_Juven | Mother tuber of Juvenile | 53.59 |