Detail information of GWHGAAEX005449/evm.TU.scaffold_163.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 5.00E-150 | FOG: PPR repeat |
| nr | gi|672183229|ref|XP_008811886.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g46100 [Phoenix dactylifera] |
| Swissprot | tr|Q9FNL2|PP418_ARATH | 1.00E-150 | Pentatricopeptide repeat-containing protein At5g46100 |
| trEMBL | tr|A0A067JB68|A0A067JB68_JATCU | 6.00E-160 | Uncharacterized protein {ECO:0000313|EMBL:KDP21012.1} |
| TAIR | AT5G46100 | 5.00E-150 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000159 | 1623087 | 1625206 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005449
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 95 | 116 | 0.005 |
| PF13041.5 | PPR_2 | 127 | 172 | 1.30E-11 |
| PF12854.6 | PPR_1 | 191 | 218 | 2.40E-11 |
| PF13041.5 | PPR_2 | 225 | 274 | 2.90E-20 |
| PF12854.6 | PPR_1 | 291 | 324 | 1.70E-09 |
| PF01535.19 | PPR | 335 | 362 | 0.041 |
| PF01535.19 | PPR | 413 | 442 | 0.06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.650 |
| SRR2545915 | Juvenile tuber | 1.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.770 |
| SRR5643514 | five period of Gastrodia elata | 1.380 | |
| SRR5643515 | five period of Gastrodia elata | 1.650 | |
| SRR5643524 | five period of Gastrodia elata | 1.070 | |
| SRR5643525 | five period of Gastrodia elata | 0.460 | |
| SRR5643528 | five period of Gastrodia elata | 1.260 | |
| SRR5643658 | five period of Gastrodia elata | 0.220 | |
| SRR5643659 | five period of Gastrodia elata | 2.330 | |
| SRR5643660 | five period of Gastrodia elata | 1.910 | |
| SRR5643661 | five period of Gastrodia elata | 2.550 | |
| SRR5643662 | five period of Gastrodia elata | 2.430 | |
| SRR5643663 | five period of Gastrodia elata | 1.810 | |
| SRR5643664 | five period of Gastrodia elata | 1.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.75 |
| Juven | Juvenile tuber | 1.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.56 | |
| Mother_Juven | Mother tuber of Juvenile | 1.94 |