Detail information of GWHGAAEX005452/evm.TU.scaffold_163.66


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|387789571|ref|YP_006254636.1|0isocitrate dehydrogenase [Solitalea canadensis DSM 3403]
KOGKOG15260NADP-dependent isocitrate dehydrogenase
nrgi|743770704|ref|XP_010915645.1|0PREDICTED: isocitrate dehydrogenase [NADP]-like isoform X2 [Elaeis guineensis]
Swissprottr|Q9SRZ6|ICDHC_ARATH0Cytosolic isocitrate dehydrogenase [NADP]
trEMBLtr|H6TNL5|H6TNL5_ELAGV0Putative isocitrate dehydrogenase protein {ECO:0000313|EMBL:AEZ00844.1} (Fragment)
TAIRAT1G659300cytosolic NADP+-dependent isocitrate dehydrogenase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015916384301657281-
Transcript Sequence

Network for GWHGAAEX005452

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.19Iso_dh814762.80E-83
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00031IDH1, IDH2, icd Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020
Carbon fixation pathways in prokaryotesmap00720
Glutathione metabolismmap00480
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0006102Biological Processisocitrate metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0004450Molecular Functionisocitrate dehydrogenase (NADP+) activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms113.810
SRR2545915Juvenile tuber79.840
SRP108465SRR5643513five period of Gastrodia elata126.850
SRR5643514five period of Gastrodia elata121.960
SRR5643515five period of Gastrodia elata117.820
SRR5643524five period of Gastrodia elata143.840
SRR5643525five period of Gastrodia elata54.880
SRR5643528five period of Gastrodia elata87.210
SRR5643658five period of Gastrodia elata77.500
SRR5643659five period of Gastrodia elata37.390
SRR5643660five period of Gastrodia elata37.430
SRR5643661five period of Gastrodia elata47.800
SRR5643662five period of Gastrodia elata17.450
SRR5643663five period of Gastrodia elata13.550
SRR5643664five period of Gastrodia elata13.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_174.190
SRR6049655Rhizomagastrodiae_C368-T10_good_161.560
SRR6049656Rhizomagastrodiae_C368-T07_good_191.120
SRR6049657Rhizomagastrodiae_C368-T07_good_178.280
SRR6049658Rhizomagastrodiae_C368-T04_good_180.610
SRR6049659Rhizomagastrodiae_C368-T04_good_189.620
SRR6049660Rhizomagastrodiae_C368-T01_good_182.350
SRR6049661Rhizomagastrodiae_C368-T04_good_174.850
SRR6049662Rhizomagastrodiae_C368-T01_good_195.280
SRR6049663Rhizomagastrodiae_C368-T01_good_1105.660
SRR6049664Rhizomagastrodiae_C368-T10_good_1112.840
SRR6049665Rhizomagastrodiae_C368-T10_good_1112.840
SRP279888GastroGastrodia elata tuber 26.19
JuvenJuvenile tuber85.21
Mother_GastroMother tuber of Gastrodia elata 99.49
Mother_JuvenMother tuber of Juvenile 100.13