Detail information of GWHGAAEX005453/evm.TU.scaffold_163.67


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16771.00E-119CCCH-type Zn-finger protein
nrgi|720015520|ref|XP_010260864.1|0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 [Nelumbo nucifera]
Swissprottr|Q941Q3|C3H37_ARATH5.00E-163Zinc finger CCCH domain-containing protein 37
trEMBLtr|D7T0Z4|D7T0Z4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI24121.3}
TAIRAT3G126801.00E-119floral homeotic protein (HUA1)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015916595291684566-
Transcript Sequence

Network for GWHGAAEX005453

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.23zf-CCCH1521763.50E-07
PF00642.23zf-CCCH2042297.70E-08
PF00642.23zf-CCCH2512751.20E-10
PF00642.23zf-CCCH3153394.30E-10
PF00642.23zf-CCCH3994221.00E-07
PF00642.23zf-CCCH4534771.10E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms225.580
SRR2545915Juvenile tuber230.620
SRP108465SRR5643513five period of Gastrodia elata115.820
SRR5643514five period of Gastrodia elata109.590
SRR5643515five period of Gastrodia elata106.110
SRR5643524five period of Gastrodia elata107.280
SRR5643525five period of Gastrodia elata128.760
SRR5643528five period of Gastrodia elata130.830
SRR5643658five period of Gastrodia elata109.690
SRR5643659five period of Gastrodia elata140.540
SRR5643660five period of Gastrodia elata132.380
SRR5643661five period of Gastrodia elata143.690
SRR5643662five period of Gastrodia elata133.250
SRR5643663five period of Gastrodia elata140.850
SRR5643664five period of Gastrodia elata141.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1145.400
SRR6049655Rhizomagastrodiae_C368-T10_good_1171.320
SRR6049656Rhizomagastrodiae_C368-T07_good_1139.700
SRR6049657Rhizomagastrodiae_C368-T07_good_1163.810
SRR6049658Rhizomagastrodiae_C368-T04_good_1141.860
SRR6049659Rhizomagastrodiae_C368-T04_good_1160.460
SRR6049660Rhizomagastrodiae_C368-T01_good_1143.780
SRR6049661Rhizomagastrodiae_C368-T04_good_1141.760
SRR6049662Rhizomagastrodiae_C368-T01_good_1136.110
SRR6049663Rhizomagastrodiae_C368-T01_good_1136.930
SRR6049664Rhizomagastrodiae_C368-T10_good_1143.550
SRR6049665Rhizomagastrodiae_C368-T10_good_1143.550
SRP279888GastroGastrodia elata tuber 142.18
JuvenJuvenile tuber146.44
Mother_GastroMother tuber of Gastrodia elata 73.39
Mother_JuvenMother tuber of Juvenile 96.82