Detail information of GWHGAAEX005461/evm.TU.scaffold_163.77
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307154267|ref|YP_003889651.1| | 3.00E-47 | Serine/threonine-protein kinase-like domain-containing protein [Cyanothece sp. PCC 7822] |
| KOG | KOG0285 | 0 | Pleiotropic regulator 1 |
| nr | gi|672122803|ref|XP_008784744.1| | 0 | PREDICTED: protein pleiotropic regulatory locus 1-like [Phoenix dactylifera] |
| Swissprot | tr|Q42384|PRL1_ARATH | 0 | Protein pleiotropic regulatory locus 1 |
| trEMBL | tr|M0RPN4|M0RPN4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P05540_001} |
| TAIR | AT4G15900 | 0 | pleiotropic regulatory locus 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000159 | 1953697 | 2020804 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005461
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 174 | 211 | 7.30E-10 |
| PF00400.31 | WD40 | 217 | 253 | 9.40E-05 |
| PF00400.31 | WD40 | 258 | 295 | 2.80E-06 |
| PF00400.31 | WD40 | 305 | 337 | 0.00041 |
| PF00400.31 | WD40 | 341 | 373 | 0.14 |
| PF00400.31 | WD40 | 444 | 470 | 0.054 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12862 | PLRG1, PRL1, PRP46 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 35.130 |
| SRR2545915 | Juvenile tuber | 38.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.180 |
| SRR5643514 | five period of Gastrodia elata | 38.280 | |
| SRR5643515 | five period of Gastrodia elata | 35.650 | |
| SRR5643524 | five period of Gastrodia elata | 35.590 | |
| SRR5643525 | five period of Gastrodia elata | 25.910 | |
| SRR5643528 | five period of Gastrodia elata | 30.410 | |
| SRR5643658 | five period of Gastrodia elata | 27.540 | |
| SRR5643659 | five period of Gastrodia elata | 31.730 | |
| SRR5643660 | five period of Gastrodia elata | 35.560 | |
| SRR5643661 | five period of Gastrodia elata | 29.950 | |
| SRR5643662 | five period of Gastrodia elata | 30.580 | |
| SRR5643663 | five period of Gastrodia elata | 28.600 | |
| SRR5643664 | five period of Gastrodia elata | 27.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 41.28 |
| Juven | Juvenile tuber | 54.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 39.90 | |
| Mother_Juven | Mother tuber of Juvenile | 60.12 |