Gene detail

Detail information of GWHGAAEX005462/evm.TU.scaffold_163.79

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743813836\|ref\|XP_010929840.1\|	PREDICTED: protein PRD1 [Elaeis guineensis]
Swissprot	tr\|O23277\|PRD1_ARATH	Protein PRD1
trEMBL	tr\|M0SUK1\|M0SUK1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P00720_001}
TAIR	AT4G14180	putative recombination initiation defect 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000159	2023580	2044039	-

Transcript Sequence
>GWHTAAEX005462 AGTTGCACTGCTTTGGAGAGCTCTTAAATTCACATCAGGGTAGTAGCCCTGCAGCTCACATCAGAGAAATAGGTTCCCTTTTCTCCAATCTCCTACTAGGACTCCAGCTTCCAAGTGAAGAATTGCGTGGGGAAGTATTATTTGTAATTTATAAACTATGCTCTCTGGATATCACGCCATGGGATGATGATGAGGATGATGACAACTATGTGGAGTCCATGGATGTTGGGGCAGCGGCAACCTTGTTGCGATTTTCTTTGGAAATTTTGCTTAAAACTCAGCATGATGAAGTTCGCATGAATTGTTTGGGTAGATCATAAACTTCTTCACTGGTTATAGCTCATGTTTTGCCAGCATTGCCTTCTTTTAATCGCTTTTTGGCTAGCGTTGCTTCTGGTATTGGTTCGGAAGGGCATTTTTCAAAACCTATTTACACATGATCTCCTCAGCATTGATCTCGAAGAAGCAAGGGCAAATGTCGACGGGATCGTGCAGAAACTTCCTTTGATTACCTTGTTTGCTGATGCAATCAAAGGCTCTTTGCTTTCTTCAGACGAAGAAATACAAAGCAACACTTTAAACTTGATCTTCAATATGCTATCGCTAGAAAATTATTCCGTTAAACTACTTCGAATTCTTGTAGAAGAGAATATTCCGGATTATATATTTGAAGTACTCAGACTATCTGGAAATAAGGATCCAGTGGTTATTTCCTGCCTTCAGGTTCTTGCTCTCTTTGCTGCTGCGGAAGAAGTCTTCAACCAGAAACTAAGAGTTGGATTCTCAACATTGCTTTCTGTTTTGCATTATACATCACAGATACCTCTGCATCCTGTTCAGGCTCAAGCACTAACACTTGTCTGTGACTGCATCTCGAATTCTCCTGGTATAATGTCCATATCCCAAGTTACAGAACTAGCGTCAATTTTGACATGCATACTAAAGAGGTGCATCAATGGAGAGCTTCCTGAGACCTTCATCTTGACATGCTCAACTTTTATTGAAATTCTCAAGTCGCCTTCTGCTAATGGAATCTCTAAAGTTGTATGTATGACCAAAGAAGCCTCAAGGTGTGCAGTTTTAACCTCGCTTTCTTCCCCACAAGGAAATCCGACAGCACTCATAATGTATTCTCTTTCATTCCTGAAAGAGGCCCATGCATACAGCCGCAGGGAAAATGGTAATGGAAGCTCTTGTAAGGAACTGGAAGAAAATATAATAGCAACTTGTCAAAATTGTCTGTTACCATGGCTGGAAAGAGTTGTAAATGAAGAAGTTGAGGAGGATGCTGTACACGAAGTCCTTCAGACATTTCATATGATTTTGCTCAGTGGTTCTGAGATACAAACCCAAATTTTAGCAGATAAGCTTATTTCTTCTTGTTGGTTTACCTTGTGTTTTACTTATTTGGGCCTATTTCCAACTGATCAGATGAGATCAAGTATCTATTTGATTTTTGCTTCGCTGATTGATCAAACTCTGGGCTCTAATTTTGGGCAGCCCATTCGAGATGCTTTTTTATATCTCCCACTGGATCCTCTTGATTTAATTTTTTTGTTGGGACAAAAAAGCTCTATTGATCGTCAACTAGCGCAATGCCAGCGTGCCAGCCTTTTACTTTTTTATGTTAGCTCACTCTCAGGTGAAAGGCTTGTAGATGATGCTCAGGTTCTGGCATCCTTGGAACAATATATTCTTTTAAATAGCAATACTTTTTATTGTGGAACTGGGGATTCATTAATCCTGACTCAAGTGGTGCATCTCTATGGAATTTTCTGCGGTTCCAAGTGCAGTGAGATGTCATATAGTTCAGATGCTGAGAAAATACTCCTTAATTTACTAGTCAAAGAAGATATGGAAATGTTCTCATTTGACATGCATCCAGTAGCATTGAAATGGCTTTTTCAGCAAGAAAAAATTACGGGTTACTTGTTGAACCAGATAATGAAGTTTTGCAGGTTCTCCATGGAAAAGGAATCCCACCTTGTTGTCTATTCAAATGGAAGGCAAAAAATGAACATGCAAATGATTCCAGAATTGGTGGTTTCTGGAGACAATTATGCAGCACCATTGCTTGTGTCACTTCTGAGAGAGCTTCGGGTGGGTGGCGAAGATGACATAATGTGTGTGCTGAAAACAATGGAAGGAATAGTGAAGAAATATTCTGACGCTTCTATCCGGTACTGTCTGTGCAACTTCGCTGGTGTTATACGTGCCATTTACTATTCGTCATATTGTTCGCCTCAGCTCTTCAGAGGTTGCTCTATGCTTGTTTTTCATGTTCTCCGTAATGCAAACTTCCACGATGCAGTATCCGAAGAGGGAGACTGGCTTTCAGTTACAATGAAGTTACTGGAATTCATTAACACTAAGCCGGCTTCTCAACTCTGGGGTCAGGAAGAGCACCTAGCAATGAGCATTTTTTGTCTCATCCTACATCATTCGAGAAACCAGGTTCTTGAAGATGCCGCAAGGGCCATACTGCTCGATGCTGCTCTGGCTTCTGCAGTTGAGAATATTGTTCAGACAGCCTGCGCAAAAGGTCCAGCGTTAGTAGACCATGATGAAGAAAATGAGACTGGGGAGTGCTTAACCTTTGTTCTTTTGCTGTATTTCTTTTCCTTGAACAGTTTCTATTCTTCTGCTTCACAAGAATGTCTGGACTGGCAAGGCTTGCTTCAGTGCCTCAAAACTGCTCCCCCTCAACTGCTATTCTCTATAAAATGCCATGATTTATGCCGACTGATGCACTTCGGGTCTCCTCTACTCAAGGCGCTGTCGTCTCAGTGCTTGGCAGAAACACTCAGCAGAATCTCGGATCAACGAGAGAGGAACCGCCAAGAATTAAGATGCCCGACGAAATATCTGCAAGCAATGATAGCCATTATGGAAAATCTAGTTCTCTACGAAGAGGAAATCGTGGCCACTAACTGTGGCATCTGTTTATCCATGATTTTGAGTTGGGAGAGCTTGGGTTTGAGAGAGAGAACAGTGGTAGGAAATTGTAAATGGTCCAGGTTCATAATGGAGGAGTTCGCAATGACTTTAATGGCTCCCGGCATGGCTTCAAAATACTTTAAAAATCAGCACAAGCCTGCTTCTCACATTGCTGCTGCCTTGCTTAAACTAAACGAAACGCCTGAATGGATGGGATCTGTATTTGGGGCATCTTGCATCTCTGGTATAATCAGCAATCTATGCCCACAGAAATTGAGTGCAGAGATGGTTAATCTATTTAGAGCGCTTTTGGCGAGGAAATATCTGAATGAATCTCATATCGGATGTTTAAATCAAGCTTTTCAGGTCTGCAGAAAACAAGTGTACAAGGAAACTAGTACTAAAGACAAGGCACAAGAAATTTTAGCTGACAAATTTATTTCTGACTATGATGATTTAAACAAAATTTGCAAGCTTCTCATTCAACTAACGGTGTCTCCTATATACAGAGAAAAGGAGACTGAGCATCAGAAGTTATTGAAGGAAATTGATTTGTTTTATTTAGAGCTATCAGCACAGAGTAAATGAGATGCTTCTTTATTATCCAATAATAAGCATATGCTTTAAGTGGATGATGTGAGTGATGTAAATCAAGGATCCTAGTAGATTTTCTAATTCATACAGGCTGCAAGTCTTAACAATATCCAAGAATGTTCGCTTATGCTTTGAGTGGCATAAAGGATTCATTGATTAGGATTATTAGCTATACTAATGGGGCTATGCTTCTCATTTTTTACTTTTAAGATTTTTAATTGCTAATATCTCTCACTTGATCTTATAAGCTCAAAGTCGAGTGCACACATATTTGTAGTTTTTGGCACTATTATCTACTATCTATACACATCAAATCATCACACTTGATGAATGTTCTTGTTGCAGTTCCTTTGATCCAAGAATATGAACAAGTATATCATTTGTAAATTGATTTCGATTACTATAATGAAGTTGAGTGCTCAC

Network for GWHGAAEX005462

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX005462
MFCQHCLLLIAFWLALLLVLVRKGIFQNLFTHDLLSIDLEEARANVDGIVQKLPLITLFADAIKGSLLSSDEEIQSNTLNLIFNMLSLENYSVKLLRILVEENIPDYIFEVLRLSGNKDPVVISCLQVLALFAAAEEVFNQKLRVGFSTLLSVLHYTSQIPLHPVQAQALTLVCDCISNSPGIMSISQVTELASILTCILKRCINGELPETFILTCSTFIEILKSPSANGISKVVCMTKEASRCAVLTSLSSPQGNPTALIMYSLSFLKEAHAYSRRENGNGSSCKELEENIIATCQNCLLPWLERVVNEEVEEDAVHEVLQTFHMILLSGSEIQTQILADKLISSCWFTLCFTYLGLFPTDQMRSSIYLIFASLIDQTLGSNFGQPIRDAFLYLPLDPLDLIFLLGQKSSIDRQLAQCQRASLLLFYVSSLSGERLVDDAQVLASLEQYILLNSNTFYCGTGDSLILTQVVHLYGIFCGSKCSEMSYSSDAEKILLNLLVKEDMEMFSFDMHPVALKWLFQQEKITGYLLNQIMKFCRFSMEKESHLVVYSNGRQKMNMQMIPELVVSGDNYAAPLLVSLLRELRVGGEDDIMCVLKTMEGIVKKYSDASIRYCLCNFAGVIRAIYYSSYCSPQLFRGCSMLVFHVLRNANFHDAVSEEGDWLSVTMKLLEFINTKPASQLWGQEEHLAMSIFCLILHHSRNQVLEDAARAILLDAALASAVENIVQTACAKGPALVDHDEENETGECLTFVLLLYFFSLNSFYSSASQECLDWQGLLQCLKTAPPQLLFSIKCHDLCRLMHFGSPLLKALSSQCLAETLSRISDQRERNRQELRCPTKYLQAMIAIMENLVLYEEEIVATNCGICLSMILSWESLGLRERTVVGNCKWSRFIMEEFAMTLMAPGMASKYFKNQHKPASHIAAALLKLNETPEWMGSVFGASCISGIISNLCPQKLSAEMVNLFRALLARKYLNESHIGCLNQAFQVCRKQVYKETSTKDKAQEILADKFISDYDDLNKICKLLIQLTVSPIYREKETEHQKLLKEIDLFYLELSAQSK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.960
SRP064423	SRR2545915	Juvenile tuber	1.160
SRP108465	SRR5643513	five period of Gastrodia elata	0.560
	SRR5643514	five period of Gastrodia elata	1.330
	SRR5643515	five period of Gastrodia elata	0.610
	SRR5643524	five period of Gastrodia elata	0.940
	SRR5643525	five period of Gastrodia elata	1.080
	SRR5643528	five period of Gastrodia elata	0.400
	SRR5643658	five period of Gastrodia elata	1.020
	SRR5643659	five period of Gastrodia elata	0.540
	SRR5643660	five period of Gastrodia elata	0.350
	SRR5643661	five period of Gastrodia elata	0.600
	SRR5643662	five period of Gastrodia elata	0.320
	SRR5643663	five period of Gastrodia elata	0.330
	SRR5643664	five period of Gastrodia elata	0.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.880
SRP279888	Gastro	Gastrodia elata tuber	1.06
	Juven	Juvenile tuber	0.47
	Mother_Gastro	Mother tuber of Gastrodia elata	5.25
	Mother_Juven	Mother tuber of Juvenile	1.01