Detail information of GWHGAAEX005464/evm.TU.scaffold_163.81


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|312112978|ref|YP_004010574.1|5.00E-107NAD-dependent epimerase/dehydratase [Rhodomicrobium vannielii ATCC 17100]
KOGKOG13710UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase
nrgi|702440948|ref|XP_010023657.1|0PREDICTED: UDP-glucuronate 4-epimerase 6 [Eucalyptus grandis]
Swissprottr|Q9LIS3|GAE6_ARATH0UDP-glucuronate 4-epimerase 6
trEMBLtr|A0A059B1I4|A0A059B1I4_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW59958.1}
TAIRAT3G238200UDP-D-glucuronate 4-epimerase 6

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015920719052073224-
Transcript Sequence

Network for GWHGAAEX005464

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01370.20Epimerase1013411.50E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08679E5.1.3.6 Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0050662Molecular Functioncoenzyme binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.410
SRR2545915Juvenile tuber21.900
SRP108465SRR5643513five period of Gastrodia elata59.390
SRR5643514five period of Gastrodia elata93.400
SRR5643515five period of Gastrodia elata75.280
SRR5643524five period of Gastrodia elata66.410
SRR5643525five period of Gastrodia elata38.680
SRR5643528five period of Gastrodia elata56.880
SRR5643658five period of Gastrodia elata31.090
SRR5643659five period of Gastrodia elata341.510
SRR5643660five period of Gastrodia elata203.480
SRR5643661five period of Gastrodia elata357.000
SRR5643662five period of Gastrodia elata215.640
SRR5643663five period of Gastrodia elata304.380
SRR5643664five period of Gastrodia elata163.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_196.450
SRR6049655Rhizomagastrodiae_C368-T10_good_1142.330
SRR6049656Rhizomagastrodiae_C368-T07_good_196.710
SRR6049657Rhizomagastrodiae_C368-T07_good_187.270
SRR6049658Rhizomagastrodiae_C368-T04_good_171.320
SRR6049659Rhizomagastrodiae_C368-T04_good_175.100
SRR6049660Rhizomagastrodiae_C368-T01_good_199.610
SRR6049661Rhizomagastrodiae_C368-T04_good_181.100
SRR6049662Rhizomagastrodiae_C368-T01_good_1113.880
SRR6049663Rhizomagastrodiae_C368-T01_good_199.950
SRR6049664Rhizomagastrodiae_C368-T10_good_194.750
SRR6049665Rhizomagastrodiae_C368-T10_good_194.750
SRP279888GastroGastrodia elata tuber 62.32
JuvenJuvenile tuber26.87
Mother_GastroMother tuber of Gastrodia elata 4.44
Mother_JuvenMother tuber of Juvenile 5.33