Detail information of GWHGAAEX005470/evm.TU.scaffold_163.88
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|11499188|ref|NP_070424.1| | 2.00E-57 | hypothetical protein AF1595 [Archaeoglobus fulgidus DSM 4304] |
| KOG | KOG2840 | 0 | Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily |
| nr | gi|672116176|ref|XP_008781246.1| | 0 | PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Phoenix dactylifera] |
| Swissprot | tr|O64862|CTU1_ARATH | 0 | Cytoplasmic tRNA 2-thiolation protein 1 {ECO:0000255|HAMAP-Rule:MF_03053} |
| trEMBL | tr|D7LKY4|D7LKY4_ARALL | 0 | Cytoplasmic tRNA 2-thiolation protein 1 {ECO:0000256|HAMAP-Rule:MF_03053} |
| TAIR | AT2G44270 | 0 | repressor of lrx1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000159 | 2222960 | 2281084 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005470
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01171.19 | ATP_bind_3 | 60 | 251 | 2.50E-14 |
| PF16503.4 | zn-ribbon_14 | 287 | 318 | 3.70E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14168 | CTU1, NCS6 | Sulfur relay system | map04122 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0034227 | Biological Process | tRNA thio-modification |
| GO:0008033 | Biological Process | tRNA processing |
| GO:0002098 | Biological Process | tRNA wobble uridine modification |
| GO:0000049 | Molecular Function | tRNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.300 |
| SRR2545915 | Juvenile tuber | 29.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.920 |
| SRR5643514 | five period of Gastrodia elata | 23.590 | |
| SRR5643515 | five period of Gastrodia elata | 20.920 | |
| SRR5643524 | five period of Gastrodia elata | 23.220 | |
| SRR5643525 | five period of Gastrodia elata | 22.240 | |
| SRR5643528 | five period of Gastrodia elata | 30.600 | |
| SRR5643658 | five period of Gastrodia elata | 21.760 | |
| SRR5643659 | five period of Gastrodia elata | 46.160 | |
| SRR5643660 | five period of Gastrodia elata | 39.630 | |
| SRR5643661 | five period of Gastrodia elata | 41.320 | |
| SRR5643662 | five period of Gastrodia elata | 28.050 | |
| SRR5643663 | five period of Gastrodia elata | 40.440 | |
| SRR5643664 | five period of Gastrodia elata | 37.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.34 |
| Juven | Juvenile tuber | 42.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.87 | |
| Mother_Juven | Mother tuber of Juvenile | 38.56 |