Detail information of GWHGAAEX005472/evm.TU.scaffold_163.90


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428778567|ref|YP_007170353.1|7.00E-92ribosome small subunit-dependent GTPase A [Dactylococcopsis salina PCC 8305]
nrgi|743866994|ref|XP_010905200.1|0PREDICTED: uncharacterized protein LOC105032445 [Elaeis guineensis]
trEMBLtr|W9SGY1|W9SGY1_9ROSA5.00E-171Putative ribosome biogenesis GTPase RsgA {ECO:0000313|EMBL:EXC06148.1}
TAIRAT1G674404.00E-157Minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015922864222289167+
Transcript Sequence

Network for GWHGAAEX005472

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03193.15RsgA_GTPase1543383.10E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06949rsgA, engC Metabolic pathways map01100
Thiamine metabolismmap00730

Gene Ontology

GO term OntologyName
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.840
SRR2545915Juvenile tuber21.810
SRP108465SRR5643513five period of Gastrodia elata17.780
SRR5643514five period of Gastrodia elata24.650
SRR5643515five period of Gastrodia elata20.160
SRR5643524five period of Gastrodia elata25.720
SRR5643525five period of Gastrodia elata26.860
SRR5643528five period of Gastrodia elata23.100
SRR5643658five period of Gastrodia elata26.730
SRR5643659five period of Gastrodia elata13.740
SRR5643660five period of Gastrodia elata16.860
SRR5643661five period of Gastrodia elata16.750
SRR5643662five period of Gastrodia elata17.870
SRR5643663five period of Gastrodia elata16.700
SRR5643664five period of Gastrodia elata16.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.270
SRR6049655Rhizomagastrodiae_C368-T10_good_122.750
SRR6049656Rhizomagastrodiae_C368-T07_good_123.240
SRR6049657Rhizomagastrodiae_C368-T07_good_117.950
SRR6049658Rhizomagastrodiae_C368-T04_good_127.430
SRR6049659Rhizomagastrodiae_C368-T04_good_128.550
SRR6049660Rhizomagastrodiae_C368-T01_good_130.400
SRR6049661Rhizomagastrodiae_C368-T04_good_127.320
SRR6049662Rhizomagastrodiae_C368-T01_good_124.730
SRR6049663Rhizomagastrodiae_C368-T01_good_123.080
SRR6049664Rhizomagastrodiae_C368-T10_good_119.720
SRR6049665Rhizomagastrodiae_C368-T10_good_119.720
SRP279888GastroGastrodia elata tuber 16.45
JuvenJuvenile tuber16.83
Mother_GastroMother tuber of Gastrodia elata 24.55
Mother_JuvenMother tuber of Juvenile 15.80