Detail information of GWHGAAEX005477/evm.TU.scaffold_164.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307151180|ref|YP_003886564.1|3.00E-109indole-3-glycerol-phosphate synthase [Cyanothece sp. PCC 7822]
KOGKOG42014.00E-162Anthranilate synthase component II
nrgi|672177315|ref|XP_008808747.1|8.72E-180PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Phoenix dactylifera]
Swissprottr|P49572|TRPC_ARATH7.00E-147Indole-3-glycerol phosphate synthase, chloroplastic (Precursor)
trEMBLtr|M0SDX5|M0SDX5_MUSAM2.00E-176Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P12080_001}
TAIRAT5G482204.00E-162Aldolase-type TIM barrel family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000168515784553126+
Transcript Sequence

Network for GWHGAAEX005477

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00218.20IGPS1293934.80E-79
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01609trpC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0006568Biological Processtryptophan metabolic process
GO:0004425Molecular Functionindole-3-glycerol-phosphate synthase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.870
SRR2545915Juvenile tuber22.120
SRP108465SRR5643513five period of Gastrodia elata27.010
SRR5643514five period of Gastrodia elata33.880
SRR5643515five period of Gastrodia elata28.770
SRR5643524five period of Gastrodia elata32.570
SRR5643525five period of Gastrodia elata15.260
SRR5643528five period of Gastrodia elata18.420
SRR5643658five period of Gastrodia elata12.870
SRR5643659five period of Gastrodia elata22.590
SRR5643660five period of Gastrodia elata24.880
SRR5643661five period of Gastrodia elata23.820
SRR5643662five period of Gastrodia elata21.980
SRR5643663five period of Gastrodia elata20.840
SRR5643664five period of Gastrodia elata16.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.840
SRR6049655Rhizomagastrodiae_C368-T10_good_117.860
SRR6049656Rhizomagastrodiae_C368-T07_good_123.620
SRR6049657Rhizomagastrodiae_C368-T07_good_117.510
SRR6049658Rhizomagastrodiae_C368-T04_good_115.180
SRR6049659Rhizomagastrodiae_C368-T04_good_115.260
SRR6049660Rhizomagastrodiae_C368-T01_good_118.500
SRR6049661Rhizomagastrodiae_C368-T04_good_121.510
SRR6049662Rhizomagastrodiae_C368-T01_good_127.560
SRR6049663Rhizomagastrodiae_C368-T01_good_121.950
SRR6049664Rhizomagastrodiae_C368-T10_good_133.770
SRR6049665Rhizomagastrodiae_C368-T10_good_133.770
SRP279888GastroGastrodia elata tuber 17.13
JuvenJuvenile tuber30.97
Mother_GastroMother tuber of Gastrodia elata 26.43
Mother_JuvenMother tuber of Juvenile 19.11