Gene detail

Detail information of GWHGAAEX005478/evm.TU.scaffold_164.7

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|433609836\|ref\|YP_007042205.1\|	6.00E-82	putative 4-coumarate-CoA ligase 3 [Saccharothrix espanaensis DSM 44229]
KOG	KOG1176	2.00E-149	Acyl-CoA synthetase
nr	gi\|672174929\|ref\|XP_008807546.1\|	0	PREDICTED: 4-coumarate--CoA ligase-like 7 [Phoenix dactylifera]
Swissprot	tr\|Q69RG7\|4CLL7_ORYSJ	0	4-coumarate--CoA ligase-like 7
trEMBL	tr\|I1Q9R9\|I1Q9R9_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA07G0086100.1}
TAIR	AT5G63380	2.00E-149	AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000168	771595	776282	-

Transcript Sequence
>GWHTAAEX005478 CTCCCCAATGAAAACAAAAGTGGGAGGAGGCATGGACCCTCAGAGCGGGTTCTGCCCATCCACAAAGGCATTCCTTAGCCTCCGCCCTGCCGTCAGCCTCCCTCCTCCTTCCCTCGCTCTCTCCTACACATCGTTCGCCCTTTCCGACCAGCCCCCGTCCATCCAGAGCAACGCCGCTCTCATCGACGCCTCGACCGGCGCCTCGCTCTCCTTCGCCTCGTTCTCATCGCGTGTCTTCTCCCTCGCGTCGATCCTACGTTCTTCCCACGGCCTCTCCCGCGGCCAAGTTGCCTTCGTCGTCTTCCACGCGTCCATCGACCTCCCGGTCCTCTACTTCTCTCTCCTCTCTCTCGGTGTCACTGTCGCCCCCGCAAACCCCGCCTGCACCCCCTCCGAGCTCTCCCGCCTCGTCGGCCTCGCCGCCCCCTCCCTCATCATCACCCACTCATCCGTCGCTCCAAACCTCCCTCCCGCCCTACCCGCCCCAGTCCTACTCCTCGACTCCCCCACATTCCGCTCCCCTGGCGCCGCCCGTATCCCGCCCCTCCCTGTTGCCCAGTCCGACACTGCCGCGATACTCTTCTCTTCCGGGACTACCGGGCGCACGAAGGCTGCCGCGATAGCGCACCGCAGCTTCATCGCGATGACCGCGGGGTACCGCGCGCTGAATCGGCGGCCAGGCGGAGGCCCGGGAGTCACGATGATCCCGGCCCCCATGTTCCACTCCATGGGCTTCTTCTTCGCTCTCAACGTGCTTGCAATGGGCGACACCCTCGTGCTGATGGACCGGCCGACGTTCCCTGAGATTATGAGGGCTGCGGAACGGTACGGCGCAACGGAGATCGTCGCGGCGCCGCCGGTGGTCCTGGCAATGGCGAGGCCGGGCACGCCGGATTTGCCAAAGCTCGAGCGGGTCACCTGCGGTGGCGCGCCGTTGCCTGCGGAAGCAGCGGGGAGATTCCTGTCCAAATTCCAGGGCGTCCTGCTCTGCCAGGGATACGGGTCAACGGAGGCGGGAGGAATCTCGAGAATGATCGACGCAGAGGAATGCCGCCACCAGAAATCGGCGGGGCGACTAAGCGAAAACGTCGAGGGCAAGATAGTCAGCCCTCTCACCGGAGAGCCGCAGTGCGTCGGGCAGCCGGGCGAGCTCTGGCTCAGAGGCCCAGCGCTGATGAAGGGCTACGTCGGGGACGAGGAGGCCAACGAGAAGGCCTTCGATGCAGAGGGCTGGCTGAAGACGGGCGACCTCTGCTACTTCGACCAGAACGGATTTCTTTACGTGGTCGATAGATTGAAGGAGCTCATAAAATACAAAGCTTATCAGGTTCCTCCTGCCGAATTGGAGCATATTCTTCTGTCCTTGCCGGAGATTATTGATGTTGCTGTCATCCCTATAATATATGATAGATTCCCTCAAGAAGAGGTTGGGCAGATTCCTGTGGCCTTTGTGGTGAGGCATCCCGGCAGCACCATCACTGAAGCTGACATCATGAATTACGTGGCAAAGCAGGTTGCCCCATACAAAAAAATACGAAAAGTTTCGTTCGTCGAATCCATACCGAAGTCGGTGTCCGGAAAGATCCTGAGAAAGGAATTGGCGTCCAATTACGCAAAATCAGTCCCCGCCACACTGATGTCCCGTATTTAAACAAATTTATAAATAAATAAATTAAAATGTATATTTGAAGGAGTTTTTCTTGTTATTTTGAGCAGTTAAATAGGATTCGACTCGAGCCGTTCAATTTGAAAATTTTGAGTTAAGTCAAAATATATTGAATTTAAATGTTGTTGCAACATATTTGTTATACCTCAAAATGCTTACTAAATAATATATATTTTAGTTAGTCATCTAGTTAGGGAGAGCTACAGTACAACATTTACAGAGGACTAATGGAAGGTCAGTAAGGGTGTACTCATTGTTGCACGAGGCAATATGAAAGGTACACTTTACATGATCAACAAAGCGTTTGATTTCATTGCAATTGCAAAATATATAGACGCGGGTCTTGAGCACCAGAGACTTGGCCGTATGAGTGCGAGGGGTTTGAAATCACTACAGTCAAGGGGAAGGATTCCAAGACTGAAGCCAGTGGACTTAGATTTTTATGAAAATTGTGTACTGAGCAAAAAGAAAAAGGTTACAATGAAAAAAGTTGAAAGACAGGAAATTTGAGTTGGTGCATACATATGTATGAGAGCTAGGGCGCACGGGTGCGCCATAGCGGATCCGATAAAAGAAGAAATACAAGTAATTTCATGTTATGATGATCTACTTTAATTTGTTTTCCCATATTTCAGGCCAAAAAGACAAGCTGGGGAAATTCTTGAAGAAAACTGAAATTCTGAAGGAAAATCGCTGTAGCGCGCCACAGCGCTCTAAGGCAGGTCGGACTCGAAACCTCAACCGCCACAGTGCGCTATAGTGGATCCGATACGAAAGCTTGACTGCTACTGCACGCTACAGCGGCAGTTATAAAATCAGACTCAGCACATTAAGACTTAACAGAACCGCTATAGCACACTATAGCGGATCCGATATGAAATTTCGCCCGCTACAGCGCGCCACAACGGCTTTTCTAAAACCATAAAATAAATGAGGATTTAATATACCCGATGTTGCGCGCCAAGGCGGATTTAACTCGAAACCTCAACCACTCCTGCGCGCTGCAGCGGAGTAAAAATCGAATGAAGATTTATTCATCTGCTACCAAGTGTTGCATCAGACCCGACTCAAGAGCTCAAGCGCTGCCGCACGCCACAACGGGATTGGACTTAGCAAAATTCTTAACAGGTCCGCTACCGGGTGCTACAGTGGGTACAATTTGTTGGAAGAAATGGATGAGAATGCGTATTAGTGGCTATCTAAGTGACTTCATATAGCTAAAAAGGAATGCAGTTCGCTAAATGATTTGCAAAAAATTACTGAACTCCAATATCAAATTTTCCAACTTAATAGAAGAATAGAAAACATGCAAATAAACTCAATTCAAGTGGAGGAATATGAAATGCGGAGTGTGAATGCTATAGTAAACCTTGGGAATAATCAAGGCAAGAGAGAAGGGAGCTTTGAACATTATTTGAGAAAATTCAAAACCTCCACCATAGAATTCATGAATTAAACTGATGCAACACTGAACCAACACGAAAGCACTCTACTAAGACAAGAAGAGACAGTAAAAAGAATCGAGCAACAGGTAAAAGAGATTTTGAATCAACTTAAGAAACCTGCCTTTTTGGGACCAATAAGAGAAAACATGACTAAATTGGGATATTCTATAACCTTAAGAAGTGGAAAAATAACTGAACCGAATAGGCTTAAGAAAGCTGAAAAAATGTCTAAGGCAA

Network for GWHGAAEX005478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.27	AMP-binding	56	436	7.50E-80
PF13193.5	AMP-binding_C	445	525	3.70E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.310
SRP064423	SRR2545915	Juvenile tuber	11.040
SRP108465	SRR5643513	five period of Gastrodia elata	40.450
	SRR5643514	five period of Gastrodia elata	55.490
	SRR5643515	five period of Gastrodia elata	40.600
	SRR5643524	five period of Gastrodia elata	76.960
	SRR5643525	five period of Gastrodia elata	0.190
	SRR5643528	five period of Gastrodia elata	0.290
	SRR5643658	five period of Gastrodia elata	0.140
	SRR5643659	five period of Gastrodia elata	24.250
	SRR5643660	five period of Gastrodia elata	23.400
	SRR5643661	five period of Gastrodia elata	36.930
	SRR5643662	five period of Gastrodia elata	32.220
	SRR5643663	five period of Gastrodia elata	20.810
	SRR5643664	five period of Gastrodia elata	8.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	66.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	56.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	69.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	59.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	88.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	107.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.430
SRP279888	Gastro	Gastrodia elata tuber	8.55
	Juven	Juvenile tuber	106.93
	Mother_Gastro	Mother tuber of Gastrodia elata	2.96
	Mother_Juven	Mother tuber of Juvenile	21.02