Detail information of GWHGAAEX005481/evm.TU.scaffold_164.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|408420278|ref|YP_006761692.1|5.00E-1021-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA [Desulfobacula toluolica Tol2]
KOGKOG30551.00E-133Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
nrgi|719974461|ref|XP_010245000.1|6.71E-142PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Nelumbo nucifera]
Swissprottr|O82782|HIS3_ARATH3.00E-1341-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic (Precursor)
trEMBLtr|D7TJ73|D7TJ73_VITVI4.00E-142Putative uncharacterized protein {ECO:0000313|EMBL:CBI30299.3}
TAIRAT2G362301.00E-133Aldolase-type TIM barrel family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000016810818761147168+
Transcript Sequence

Network for GWHGAAEX005481

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00977.20His_biosynth382702.30E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01814hisA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Histidine metabolismmap00340

Gene Ontology

GO term OntologyName
GO:0000105Biological Processhistidine biosynthetic process
GO:0003949Molecular Function1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.110
SRR2545915Juvenile tuber27.780
SRP108465SRR5643513five period of Gastrodia elata34.290
SRR5643514five period of Gastrodia elata28.760
SRR5643515five period of Gastrodia elata27.790
SRR5643524five period of Gastrodia elata29.210
SRR5643525five period of Gastrodia elata43.290
SRR5643528five period of Gastrodia elata42.760
SRR5643658five period of Gastrodia elata36.760
SRR5643659five period of Gastrodia elata30.000
SRR5643660five period of Gastrodia elata26.940
SRR5643661five period of Gastrodia elata28.710
SRR5643662five period of Gastrodia elata29.910
SRR5643663five period of Gastrodia elata31.730
SRR5643664five period of Gastrodia elata35.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.320
SRR6049655Rhizomagastrodiae_C368-T10_good_138.390
SRR6049656Rhizomagastrodiae_C368-T07_good_130.310
SRR6049657Rhizomagastrodiae_C368-T07_good_124.980
SRR6049658Rhizomagastrodiae_C368-T04_good_121.370
SRR6049659Rhizomagastrodiae_C368-T04_good_126.820
SRR6049660Rhizomagastrodiae_C368-T01_good_125.950
SRR6049661Rhizomagastrodiae_C368-T04_good_122.750
SRR6049662Rhizomagastrodiae_C368-T01_good_127.140
SRR6049663Rhizomagastrodiae_C368-T01_good_120.630
SRR6049664Rhizomagastrodiae_C368-T10_good_133.610
SRR6049665Rhizomagastrodiae_C368-T10_good_133.610
SRP279888GastroGastrodia elata tuber 33.55
JuvenJuvenile tuber28.51
Mother_GastroMother tuber of Gastrodia elata 23.83
Mother_JuvenMother tuber of Juvenile 16.44