Gene detail

Detail information of GWHGAAEX005486/evm.TU.scaffold_164.20

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|310820368\|ref\|YP_003952726.1\|	8.00E-35	cellulase [Stigmatella aurantiaca DW4/3-1]
nr	gi\|743864293\|ref\|XP_010904543.1\|	0	PREDICTED: uncharacterized protein LOC105031942 [Elaeis guineensis]
trEMBL	tr\|B9RMT6\|B9RMT6_RICCO	0	Hydrolase, hydrolyzing O-glycosyl compounds, putative {ECO:0000313\|EMBL:EEF47609.1}
TAIR	AT1G13130	0	Cellulase (glycosyl hydrolase family 5) protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000168	1468155	1471222	-

Transcript Sequence
>GWHTAAEX005486 AACATAGACATGGCCAAGCTTCTTCTCCACCTCCTCTCAATCTTACTCTCAGCGTGGCAGCTGAAGGCAGCTGCGGCGGCGGGTCCTACGCCAGAGCTTTCGACGAGTTCCCGCTGGATAGTGGATGAGTCGGGACGGCGGGTGAAGCTCGCATGCGTGAACTGGGCGGCGCATCTTGAGCCTATGCTGGCAGAAGGGCTCAGCAAGCAGCCTCTGGATGCCATTTCCAAAACCATAGCTTCAACGGGCTTCAACTGCGTCAGGCTGACATGGTCGCTCTTCCTTGCCGCAGACGGCAGCTCGTCTTCCCTCACCGTCCGGCAATCCTTCTCTTCCCTCGGCCTCAACGAGTCCCTCGCCGCCATCCAAGCAAACAACCCAACCCTTGTTGATGTCCCTCTACTTCAGGCATACAAGGCTGTGGTTAACAGCTTGGGTGAGAATAATGTGATGGTGATATTGGATAACCATATAAGTAAACCGGGATGGTGCTGCAGCGGGTCTGATGGCAATGGCTTTTTTGGAGACGAGTATTTCGACCCGGATTTGTGGGTGAGCGGCTTAACTAAGATGGCTGCTGTGTTCAACGGGACTGCCACTGTGGTTGGCATGAGCTTAAGGAATGAACTCAGGGGAGCCAGGCAGAATGTAAATGACTGGTACAAATACATGCAGAGGGGAGCAGAGGCGGTGCACAGGGCGAATCCGAGGGTCCTGATCATACTCTCCGGCCTGAGCTTCGACAACGACCTGAGTTTCCTCAGGAAGAAACAAGTGGAAGTGAGCTTCTCTTCAAAGCTGGTATTCGAGCTGCACTGGTATGCGTTCTCCAACGGAGACGCCTGGGAGAGGGGGAACCCGAATCAGGTCTGCGGCTCCGTCGGGTCGAGCTTCATGGCCAGGGGAGGATTCCTGCCCAGCCTGGGCTGGCCTCTATTCATCAGCGAGCTGGGAGTGGATCTCAGAGGCTCGAACCCGAACGACAACCGTTTCTTGGGCTGCGCCATTGCCTTGGCCGCTCAGTTAGATGCCGATTGGGCTCTGTGGGCGCTGCAAGGAAGCTACTACCTCAGGCAAGGCGTGCACGCCATGGAAGAGTTCTATGGCTTGGTCTCTTTTGACTGGAGTGCCGTCAGAAACTCCACATTCCTAAACCGGATTTCTGCTCTTCAGTCTCCTTTTCAGGGTCCAGGAATCTCTGATGAGAAGCCATACAAAGCACTCTTCCACCCGGCAACAGGGCTGTGTGCGGTGAGGAAATCTCTGCTGGAGCCGCTTCAGCTGGGATCATGCGATGAGGCCGAAGCCTGGGACTACACAGACCAGCACACGCTGTCTCCGAAGGGGACAGTAATGTGCCTCAAAGCAGCGGGCGAGGGCGAGAAGGTGAAGCTGGGGGTATTCTGCAGCGATTCTGCTTCTAAATGGGAGCTCATATCAGACTCCAGAATGCATCTATCGGCACAGCTGGATGTCGGAAACAGCAGCAGTCTCTGCTTAGATTTGGGCTCGGATGGACGCACTGTAGTGACCCACGTGTGCCGCTGCCTCGGCAAAGACCCAAAGTGCGATCCTGAAAGCCAGTGGTTCAGTATAGTTGACAGCAGAAGGCCCATCGTGTCCAAGAACTCGATCGTAGATTGGATTCTTAGGATTCTGCGCTGGAATGTGCTCTGAGATGAATTGGCTTCTTGTTATTGCAATGCAATGTTGCTGGGAGATTGAAGATGATAGGAATGACATTTATTCAATGATATTAAATTGAAGTCGAGCTTGATTTATGCTTTATAATAGTAAAAATTTGTTATAATTAGAAAGCTACCACCCTTAATATGCCAATTCCGCACGGCCCGCACGCACGCCTTCACAAGAAGATCATCGCACGGCCCGCACGCACCCCTGCACAGCCAGGTTGTTGCATGGCCCACGCCTCAAGAAGCATGTTTGACGAGATAAGAGGCGTTGAAGCTCAACGTAAGCTCTACTGCAAGAAAACAATTTTCTTTTTAGTTCTTCCTCGATTCTAGGTAATGGGACCACTTACTCATTTTAATGATTCTCACAACGTTTATTTTGTGCAAATTAAGAAAGATTATTGTTCAATAAATTATAATC

Network for GWHGAAEX005486

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00150.17	Cellulase	67	349	1.10E-21

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH5
Carbohydrate-Active enzymes Family	GH5

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.410
SRP108465	SRR5643513	five period of Gastrodia elata	0.150
	SRR5643514	five period of Gastrodia elata	0.300
	SRR5643515	five period of Gastrodia elata	0.450
	SRR5643524	five period of Gastrodia elata	0.340
	SRR5643525	five period of Gastrodia elata	17.530
	SRR5643528	five period of Gastrodia elata	21.260
	SRR5643658	five period of Gastrodia elata	37.320
	SRR5643659	five period of Gastrodia elata	0.210
	SRR5643660	five period of Gastrodia elata	0.030
	SRR5643661	five period of Gastrodia elata	0.070
	SRR5643662	five period of Gastrodia elata	0.030
	SRR5643663	five period of Gastrodia elata	0.030
	SRR5643664	five period of Gastrodia elata	0.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.280
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.01
	Mother_Gastro	Mother tuber of Gastrodia elata	12.37
	Mother_Juven	Mother tuber of Juvenile	4.34