Detail information of GWHGAAEX005488/evm.TU.scaffold_164.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|296271902|ref|YP_003654533.1| | 2.00E-43 | carbonate dehydratase [Arcobacter nitrofigilis DSM 7299] |
| KOG | KOG0382 | 5.00E-103 | Carbonic anhydrase |
| nr | gi|695024970|ref|XP_009399717.1| | 6.95E-123 | PREDICTED: alpha carbonic anhydrase 7-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8L817|ATCA7_ARATH | 2.00E-103 | Alpha carbonic anhydrase 7 (Precursor) |
| trEMBL | tr|M0SW01|M0SW01_MUSAM | 3.00E-123 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05720_001} |
| TAIR | AT1G08080 | 5.00E-103 | alpha carbonic anhydrase 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000168 | 1538074 | 1551340 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005488
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00194.20 | Carb_anhydrase | 39 | 268 | 1.60E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01674 | cah | Metabolic pathways | map01100 |
| Nitrogen metabolism | map00910 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004089 | Molecular Function | carbonate dehydratase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 45.740 |
| SRR2545915 | Juvenile tuber | 117.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 73.680 |
| SRR5643514 | five period of Gastrodia elata | 80.710 | |
| SRR5643515 | five period of Gastrodia elata | 83.450 | |
| SRR5643524 | five period of Gastrodia elata | 92.140 | |
| SRR5643525 | five period of Gastrodia elata | 78.800 | |
| SRR5643528 | five period of Gastrodia elata | 86.200 | |
| SRR5643658 | five period of Gastrodia elata | 103.040 | |
| SRR5643659 | five period of Gastrodia elata | 59.470 | |
| SRR5643660 | five period of Gastrodia elata | 80.110 | |
| SRR5643661 | five period of Gastrodia elata | 70.600 | |
| SRR5643662 | five period of Gastrodia elata | 34.310 | |
| SRR5643663 | five period of Gastrodia elata | 45.310 | |
| SRR5643664 | five period of Gastrodia elata | 35.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 112.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 129.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 151.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 132.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 188.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 186.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 142.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 213.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 188.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 153.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 134.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 134.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 145.98 |
| Juven | Juvenile tuber | 120.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 318.62 | |
| Mother_Juven | Mother tuber of Juvenile | 272.45 |