Detail information of GWHGAAEX005502/evm.TU.scaffold_165.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG00485.00E-67Transcription factor, Myb superfamily
nrgi|695024402|ref|XP_009399414.1|1.88E-73PREDICTED: myb-related protein Zm1-like [Musa acuminata subsp. malaccensis]
Swissprottr|P20024|MYB1_MAIZE1.00E-70Myb-related protein Zm1
trEMBLtr|M0SVD1|M0SVD1_MUSAM7.00E-74Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P03520_001}
TAIRAT3G232505.00E-67myb domain protein 15

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000167382173383164+
Transcript Sequence

Network for GWHGAAEX005502

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.30Myb_DNA-binding35822.10E-15
PF00249.30Myb_DNA-binding881338.50E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.670
SRR2545915Juvenile tuber4.580
SRP108465SRR5643513five period of Gastrodia elata0.110
SRR5643514five period of Gastrodia elata0.170
SRR5643515five period of Gastrodia elata0.420
SRR5643524five period of Gastrodia elata0.640
SRR5643525five period of Gastrodia elata48.980
SRR5643528five period of Gastrodia elata38.130
SRR5643658five period of Gastrodia elata77.070
SRR5643659five period of Gastrodia elata2.820
SRR5643660five period of Gastrodia elata1.990
SRR5643661five period of Gastrodia elata2.530
SRR5643662five period of Gastrodia elata7.200
SRR5643663five period of Gastrodia elata4.110
SRR5643664five period of Gastrodia elata10.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.120
SRR6049655Rhizomagastrodiae_C368-T10_good_11.280
SRR6049656Rhizomagastrodiae_C368-T07_good_11.440
SRR6049657Rhizomagastrodiae_C368-T07_good_10.380
SRR6049658Rhizomagastrodiae_C368-T04_good_11.470
SRR6049659Rhizomagastrodiae_C368-T04_good_11.500
SRR6049660Rhizomagastrodiae_C368-T01_good_11.970
SRR6049661Rhizomagastrodiae_C368-T04_good_12.840
SRR6049662Rhizomagastrodiae_C368-T01_good_10.870
SRR6049663Rhizomagastrodiae_C368-T01_good_10.390
SRR6049664Rhizomagastrodiae_C368-T10_good_10.730
SRR6049665Rhizomagastrodiae_C368-T10_good_10.730
SRP279888GastroGastrodia elata tuber 15.46
JuvenJuvenile tuber1.54
Mother_GastroMother tuber of Gastrodia elata 1.17
Mother_JuvenMother tuber of Juvenile 0.79