Gene detail

Detail information of GWHGAAEX005514/evm.TU.scaffold_165.26

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|340787855\|ref\|YP_004753320.1\|	9.00E-51	peptidyl prolyl 4-hydroxylase-like protein subunit alpha [Collimonas fungivorans Ter331]
KOG	KOG1591	9.00E-160	Prolyl 4-hydroxylase alpha subunit
nr	gi\|672178527\|ref\|XP_008809398.1\|	3.33E-164	PREDICTED: probable prolyl 4-hydroxylase 3 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9LN20\|P4H3_ARATH	3.00E-160	Probable prolyl 4-hydroxylase 3 (Precursor)
trEMBL	tr\|M0U6U4\|M0U6U4_MUSAM	5.00E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP06330_001}
TAIR	AT1G20270	9.00E-160	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000167	824724	843401	+

Transcript Sequence
>GWHTAAEX005514 TCTCTCTCTCTCTCTCTCTCTCCCATTGCACGTTCAGTTCCTTTTGCCATTCCTTCGCCGAAAATACTAGAATCGACGGCGTTGCAGGCTCAGTAACTTGCCATGGCGAGGGGTTCCCGGAACCCTCGTATTTTTTCGAGCAGGAAATCATCGACGTATACGCTTGTGCTTACGGGGCTGCTTCTGCTCTCGGTGGTTCTGCTCGTGTTGCTCGGCCTGGGTATCTTCTCCCTCCCCCTCGATTCTAATGATTCTCACAATGGCCCCCGTCGCGCCGATAGAGAGATCTCCAAGACTGATGGTATGGAAACGAGAGGGAAGCAGTGGACGGAGATACTCTCTTGGGAGCCTAGGGCTTTTATCTACCATAATTTTCTGTCAAAAGAGGAATGTGAATATCTAATAGAATTAGGAAAGCCTCATATGGTTAAATCTACCGTTGTTGATAGCAGCACTGGAAAAAGTAAAGACAGCAGGGTGAGAACTAGCTCTGGAATGTTTTTGCCTAGAGGACGAGACAAAATCATCAAGGCAATTGAGAAAAGGATTGCTGATTTTACTTTTATCCCAATGGAGCATGGGGAGGGACTTCAAATTCTTCATTATGAAGTAGGGCAGAAATATGAACCTCACTTTGACTATTTTCTTGACGAATTTAACACCAAGAATGGTGGACAAAGAATTGCTACTGTCCTCATGTACCTCTCAGATGTTGATGAAGGTGGCGAGACCATATTCCCCTCAGCTAAAGTAAACAGCAGTGCTCTTCCGTGGTACAATGAGCTATCCGAATGTGGAAAGAAGGGCCTCTCTGTTAAACCTAAAATGGGAGACGCTTTGCTGTTCTGGAGCATGAAGCCTGATGCAACTCTTGATCCATCCAGTTTACACGGTGGATGCCCAGTGATTAAAGGGAATAAGTGGTCTTCTACTAAGTGGCTGCATGTAAGCGAGTATAAAATTTAGCTAACAATTGCTGGCAAAAGGTATTAATTATCATCCTCGCTGCTTATCATGTCTCTGCATTATCGCCATCTAATCAAGCATAGCATCTATTTCAGTTTTTACTATCATTTATAGGGTAGCGTTTTCAGGGGGTTGTTTGGCATAAGAAAATTTTAGAAATTTGAGGGCAAAATAATTTAGTTACAGTGAAATCTGATTATAGTGTAATCATATTATTTTACTACTATTTGATAGTTTTATAGGAAATTTAATAATTTTACTGTTTGAAATGAAACAATTTATGAGTGATTTTTTGAGTAAATTAGGGTGATAAAATTATCTTCTAAAATTTGTTTATTTTTTCGTTAAAATTTTATAAGGTTTCGTTTAAACTAAGCGAATGAATCGTTTTGAATTTTCTTTAGTGTTTCATTCAGAACGAAACGAACGAATCGTTCGAATGAATCCTTCTAATTGTTCGTTCGAACGAAGGAAAGATTCGTCGGAGAATATGGATGAACATAATTGTTTGTTCGAACGAATTAAATCTTTTGTTCATTGAACGAGAACGAAATTCCTACTGGTTCCCTCGCTTGGTTGCAAGACTCAGCATATTCTCCAAGTACGCTCGATTCGAGCGTAATTCCGTTACTTGCTTCCTATATATATTAACACAATATCGAAATACAGTTTTATACATGTTTTACTTCATATCAAATGTCATCCCGAAAAAAGTTTATGCTTTTACCTATTGCAAACAACTCCTAAGAAAGAAGTTATTTGACTTTTAAGTAGCTCTCCAAAGGTTTGATGATATTATGATTTGCGTTAAAAATATTATTTTATAGTAGGTCCCACACAAAAATATGGATTAAATGTTGGTTTTTTGTGAGAAAAAATATTTGTATTTTTGGGAGCTATGAGAGGGATATTTGAGAGTCGTGTAACTGGATTCTTCTTAAACTAATTAGCAAACAAGCCACTGGCAGATTTTCTTTCACGCAAACCACCACTACAGAATGGAATCTGAATTGCATCGGCTTCTTGTTTTGCAGGTTATGTTTTATATATATATATATATATATATATATATATGAGAACATTTTGACAGAGTTTTAGCGTCGAAATACATCAACTGTTGGCCGAAATTATCATTATTTTTATTTGTAGCGCAACCCGTGGCTACTGGAACACGAATAGCAATTCTGTTATTTTATTTTTATTTTTGTTTAACACATGATTGTTAATAAGTGCGTGATATTCAATATTGTATGCA

Network for GWHGAAEX005514

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13640.5	2OG-FeII_Oxy_3	163	281	9.40E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00472	P4HA	Metabolic pathways	map01100
K00472	P4HA	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0031418	Molecular Function	L-ascorbic acid binding
GO:0016491	Molecular Function	oxidoreductase activity
GO:0005506	Molecular Function	iron ion binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.230
SRP064423	SRR2545915	Juvenile tuber	27.780
SRP108465	SRR5643513	five period of Gastrodia elata	40.670
	SRR5643514	five period of Gastrodia elata	20.620
	SRR5643515	five period of Gastrodia elata	46.160
	SRR5643524	five period of Gastrodia elata	31.090
	SRR5643525	five period of Gastrodia elata	35.110
	SRR5643528	five period of Gastrodia elata	39.980
	SRR5643658	five period of Gastrodia elata	24.730
	SRR5643659	five period of Gastrodia elata	32.800
	SRR5643660	five period of Gastrodia elata	27.300
	SRR5643661	five period of Gastrodia elata	38.100
	SRR5643662	five period of Gastrodia elata	38.960
	SRR5643663	five period of Gastrodia elata	34.900
	SRR5643664	five period of Gastrodia elata	23.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	23.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.340
SRP279888	Gastro	Gastrodia elata tuber	34.01
	Juven	Juvenile tuber	61.36
	Mother_Gastro	Mother tuber of Gastrodia elata	165.26
	Mother_Juven	Mother tuber of Juvenile	144.49