Detail information of GWHGAAEX005515/evm.TU.scaffold_165.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19903.00E-129Poly(A)-specific exoribonuclease PARN
nrgi|695003736|ref|XP_009387065.1|5.95E-166PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Musa acuminata subsp. malaccensis]
Swissprottr|Q67XL4|Y3544_ARATH2.00E-129Uncharacterized CRM domain-containing protein At3g25440, chloroplastic (Precursor)
trEMBLtr|B9IB22|B9IB22_POPTR1.00E-149Uncharacterized protein {ECO:0000313|EMBL:EEE99550.2}
TAIRAT3G254403.00E-129RNA-binding CRS1 / YhbY (CRM) domain protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000167886798935116+
Transcript Sequence

Network for GWHGAAEX005515

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01985.20CRS1_YhbY1712533.00E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01148PARN, PNLDC1 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.150
SRR2545915Juvenile tuber22.640
SRP108465SRR5643513five period of Gastrodia elata19.910
SRR5643514five period of Gastrodia elata20.620
SRR5643515five period of Gastrodia elata20.640
SRR5643524five period of Gastrodia elata18.580
SRR5643525five period of Gastrodia elata32.980
SRR5643528five period of Gastrodia elata32.050
SRR5643658five period of Gastrodia elata40.660
SRR5643659five period of Gastrodia elata21.260
SRR5643660five period of Gastrodia elata20.940
SRR5643661five period of Gastrodia elata18.730
SRR5643662five period of Gastrodia elata20.040
SRR5643663five period of Gastrodia elata19.710
SRR5643664five period of Gastrodia elata18.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.000
SRR6049655Rhizomagastrodiae_C368-T10_good_121.440
SRR6049656Rhizomagastrodiae_C368-T07_good_121.690
SRR6049657Rhizomagastrodiae_C368-T07_good_123.400
SRR6049658Rhizomagastrodiae_C368-T04_good_122.410
SRR6049659Rhizomagastrodiae_C368-T04_good_121.160
SRR6049660Rhizomagastrodiae_C368-T01_good_122.400
SRR6049661Rhizomagastrodiae_C368-T04_good_121.640
SRR6049662Rhizomagastrodiae_C368-T01_good_121.780
SRR6049663Rhizomagastrodiae_C368-T01_good_122.050
SRR6049664Rhizomagastrodiae_C368-T10_good_121.890
SRR6049665Rhizomagastrodiae_C368-T10_good_121.890
SRP279888GastroGastrodia elata tuber 15.93
JuvenJuvenile tuber14.29
Mother_GastroMother tuber of Gastrodia elata 22.49
Mother_JuvenMother tuber of Juvenile 18.01