Detail information of GWHGAAEX005523/evm.TU.scaffold_165.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 5.00E-54 | FOG: PPR repeat |
| nr | gi|743872319|ref|XP_010906516.1| | 1.35E-174 | PREDICTED: pentatricopeptide repeat-containing protein At5g16640, mitochondrial-like [Elaeis guineensis] |
| Swissprot | tr|Q9LUR2|PP238_ARATH | 2.00E-54 | Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial (Precursor) |
| trEMBL | tr|I1HJQ2|I1HJQ2_BRADI | 4.00E-136 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G26190.1} |
| trEMBL | tr|I1HJQ2|I1HJQ2_BRADI | 6.00E-23 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G26190.1} |
| TAIR | AT3G16710 | 5.00E-54 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000167 | 1404735 | 1413448 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005523
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 84 | 111 | 0.067 |
| PF01535.19 | PPR | 117 | 147 | 0.0028 |
| PF13041.5 | PPR_2 | 185 | 234 | 4.20E-14 |
| PF13041.5 | PPR_2 | 255 | 304 | 9.30E-13 |
| PF01535.19 | PPR | 328 | 352 | 1.1 |
| PF13041.5 | PPR_2 | 361 | 409 | 3.60E-11 |
| PF01535.19 | PPR | 430 | 458 | 0.058 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.520 |
| SRR2545915 | Juvenile tuber | 3.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.750 |
| SRR5643514 | five period of Gastrodia elata | 4.130 | |
| SRR5643515 | five period of Gastrodia elata | 5.440 | |
| SRR5643524 | five period of Gastrodia elata | 4.010 | |
| SRR5643525 | five period of Gastrodia elata | 4.950 | |
| SRR5643528 | five period of Gastrodia elata | 3.000 | |
| SRR5643658 | five period of Gastrodia elata | 3.000 | |
| SRR5643659 | five period of Gastrodia elata | 4.590 | |
| SRR5643660 | five period of Gastrodia elata | 4.790 | |
| SRR5643661 | five period of Gastrodia elata | 4.500 | |
| SRR5643662 | five period of Gastrodia elata | 4.780 | |
| SRR5643663 | five period of Gastrodia elata | 5.320 | |
| SRR5643664 | five period of Gastrodia elata | 4.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.14 |
| Juven | Juvenile tuber | 3.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.01 | |
| Mother_Juven | Mother tuber of Juvenile | 2.65 |