Detail information of GWHGAAEX005525/evm.TU.scaffold_165.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434394291|ref|YP_007129238.1| | 1.00E-16 | glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428] |
| nr | gi|567901472|ref|XP_006443224.1| | 0 | hypothetical protein CICLE_v10023400mg [Citrus clementina] |
| Swissprot | tr|Q9M9M4|CSLD3_ARATH | 0 | Cellulose synthase-like protein D3 |
| trEMBL | tr|V4VTH1|V4VTH1_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR56464.1} |
| TAIR | AT3G03050 | 0 | cellulose synthase-like D3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000167 | 1424100 | 1430940 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005525
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14570.5 | zf-RING_4 | 105 | 155 | 5.20E-13 |
| PF03552.13 | Cellulose_synt | 365 | 1146 | 0 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.930 |
| SRR2545915 | Juvenile tuber | 0.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.030 |
| SRR5643514 | five period of Gastrodia elata | 10.480 | |
| SRR5643515 | five period of Gastrodia elata | 9.140 | |
| SRR5643524 | five period of Gastrodia elata | 9.610 | |
| SRR5643525 | five period of Gastrodia elata | 1.610 | |
| SRR5643528 | five period of Gastrodia elata | 0.540 | |
| SRR5643658 | five period of Gastrodia elata | 0.650 | |
| SRR5643659 | five period of Gastrodia elata | 0.940 | |
| SRR5643660 | five period of Gastrodia elata | 0.950 | |
| SRR5643661 | five period of Gastrodia elata | 1.500 | |
| SRR5643662 | five period of Gastrodia elata | 1.890 | |
| SRR5643663 | five period of Gastrodia elata | 1.070 | |
| SRR5643664 | five period of Gastrodia elata | 2.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.240 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 36.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 36.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.28 |
| Juven | Juvenile tuber | 4.27 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 41.30 | |
| Mother_Juven | Mother tuber of Juvenile | 32.86 |