Detail information of GWHGAAEX005533/evm.TU.scaffold_165.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189218080|ref|YP_001938722.1| | 1.00E-31 | phosphatase/phosphohexomutase HAD superfamily [Methylacidiphilum infernorum V4] |
| KOG | KOG2914 | 6.00E-143 | Predicted haloacid-halidohydrolase and related hydrolases |
| nr | gi|743831743|ref|XP_010934785.1| | 3.61E-161 | PREDICTED: uncharacterized protein LOC105054861 isoform X2 [Elaeis guineensis] |
| trEMBL | tr|M0SEL0|M0SEL0_MUSAM | 6.00E-150 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P14430_001} |
| TAIR | AT4G11570 | 6.00E-143 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000167 | 1769004 | 1771055 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005533
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13419.5 | HAD_2 | 126 | 306 | 2.90E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K22912 | PYRP2 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Riboflavin metabolism | map00740 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016787 | Molecular Function | hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 46.110 |
| SRR2545915 | Juvenile tuber | 38.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.980 |
| SRR5643514 | five period of Gastrodia elata | 25.130 | |
| SRR5643515 | five period of Gastrodia elata | 21.890 | |
| SRR5643524 | five period of Gastrodia elata | 20.990 | |
| SRR5643525 | five period of Gastrodia elata | 44.000 | |
| SRR5643528 | five period of Gastrodia elata | 40.910 | |
| SRR5643658 | five period of Gastrodia elata | 51.680 | |
| SRR5643659 | five period of Gastrodia elata | 20.950 | |
| SRR5643660 | five period of Gastrodia elata | 23.620 | |
| SRR5643661 | five period of Gastrodia elata | 22.260 | |
| SRR5643662 | five period of Gastrodia elata | 31.900 | |
| SRR5643663 | five period of Gastrodia elata | 26.990 | |
| SRR5643664 | five period of Gastrodia elata | 30.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.59 |
| Juven | Juvenile tuber | 17.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.56 | |
| Mother_Juven | Mother tuber of Juvenile | 22.93 |