Gene detail

Detail information of GWHGAAEX005534/evm.TU.scaffold_165.50

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|84489102\|ref\|YP_447334.1\|	2.00E-22	exonuclease [Methanosphaera stadtmanae DSM 3091]
KOG	KOG1135	0	mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit)
nr	gi\|743831791\|ref\|XP_010934798.1\|	0	PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Elaeis guineensis]
Swissprot	tr\|Q652P4\|CPSF2_ORYSJ	0	Cleavage and polyadenylation specificity factor subunit 2
trEMBL	tr\|M0S036\|M0S036_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P15280_001}
TAIR	AT5G23880	0	cleavage and polyadenylation specificity factor 100

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000167	1787684	1866118	-

Transcript Sequence
>GWHTAAEX005534 GTTTCTTCGCAACTCTTCAGCCACACCGTGACGCAGAGATTTCTCCTCTCATAAGCGCCCATTTATGGGAACTTCAGTCCAGGTGACGCCGCTCTGCGGCGTCTACAGCGAGAACCCTCTTTGCTATTTGCTTTCTATTGATGGGTTTAATTTTCTCTTGGATTGTGGATGGAACGATCTTTGCGATACAAACCTCATACAAGCCCTCTCCAGGGTATCTTCAACAATTGATGCTGTTTTATTATCTCATCCCGACATACTCCACATTGGTGCTTTACCATATGCCATGAAACACCTGGGCCTCTCTGCTCCAATTTATGCCACTGAACCTGTATATAGACTTGGTCTTTTGACATTGTATGATTACTATCTCTCCAGAATGCAAGTTTCAGATTTTGACTTGTTCACACTGGATGATATTGATTCTGCTTTCCAAAATGTTACCAGATTAACATATTCTCAGAACTATCATCTTTCTGATAAAGGTGAAGGGATAGTAATAGCTCCTCATGTGGCTGGCCATCTTCTTGGGGGTACTGTCTGGAAGATAACAAAAGATGGAGAGGATGTTGTATATGCTGTTGACTTTAATCATCGCAAAGAACGGCACTTAAATGGAACTGTTTTAGAATCATTTGTTCGGCCTGCTGTTCTCATTACAGATGCGTACAATGCACTGAATAATCAGCTATACAAGAGGCAAAGGGATCAAGAATTCATTGAGGCAATACTAAAGGTTCTTCGGGCAAATGGTAACGTGCTGCTACCTGTTGATACTGCTGGAAGAGTTTTAGAGCTTCTTTTGATACTTGAACAGTATTGGAATCAGCAACATCTAAGCTTTCCCATTTTCTTTCTAACAAATGTTGCTACAAGTACCATTGATTATGTTAAGAGTTTTCTTGAGTGGATGAGTGACTCTATTGCAAAATCTTTTGAACATACACGAGACAATGCTTTCTTGCTCAAGCATATAAACCTTATAATTAACAAGAGCGAGCTAGAAAATTTACCAGACGTTCCAAAGGTTGTTTTGACATCGATGGCTAGCTTAGAGTTTGGTTTCTCTCATGATATATTTGTTGATTGGGCAACAGAGGCTAGGCACACTATCCTTTTTACTGAAAGAGGCCAGTTTGGTACTCTAGCTCGCATGCTTCAAGTTGATCCACCTCCAAAAGCAGTGAAAGTCATCATGAGCAAGAGGGTTCCCTTGGCAGGTGATGAATTAAAAGCATATGAAGAAGAGCAAGAAAAAAATAAAAAAGAAGCTGCTATGAAAGTTAGTCTCAGCAAGGAGTCACGGGCATCTCAGGGATCTGATGCTGACGCTGGGGATGTAATGGTTATTGATGCTTCTTCCCCTCGTGTCTCTTCAGATGCGGCTGCCTCACGCGTTGGTGGATTTCGGGATATCTTCATAGATGGGTTTGTTTCTCCTGCAACTAGTGTTGCTCCAATGTTTCCTTTTTTTGAAAGCTCTGCTGAATGGGATGATTATGGCGAGGTCATAAATCCCGATGATTACATAATTAAGGAGGAAGATATAAATGGAACGTTGGCTCAAGGCCTTGGAGGCGATCTAGATGGTAAACTTGATGAAGGCTCGGCTCACCTGTTACTTGACACCACTCCTTCGAAAGTTGTTTCAAATGAAATGACTGTGCAAGTGAAATGTTCGTTAATATACATGGACTTTGAAGGTCGGTCAGATGGACGTTCCATCAAATCTATCCTTGCACATGTTGCTCCACTGAAGCTTGTTATTGTTCATGGTTCAGCGGAAGCTACGGAACACTTGAAAGAGCATTGTTCAAAGCACGTTTGCCCGCATGTATATGCACCACAAGTTGAAGAAAAAATTGACGTAACTTCTGATTTGTGTGCATACAAGGTACAACTCTCAGAAAGGCTAATGAGTAGTGTTCTCTTCAAAAAGCTTGGTGATTATGAGATATCCTGGGTTGATGCGGAAGTAGGGAAGACAAATGACATGCTCACCTTGTTTCCTGTTCCATCAACCCCTCCTACTCACAAATCTGTACTTGTGGGAGATCTTAAATTGGCTGATTTCAAGCAGTTCCTTTCTAGCAAAGGCATCCAGGTAGAATTTTTCGGAGGTGCTTTACGCTGCGGTGAGCATGTAACCCTACGTAAGATCAGTGATTCGACTCAGAAGGGCGGCACTGGAGCCCAACATGTGCTCATTGAAGGTCCTTTGACAGAAGAATACTATCAGATAAGGGAACTGCTCTATTCTCAATTTTACTTGCTTTAGATCTATTGTTAGCTTTAAGAGCTTTTAGAGAAATTGGCTTATTTTGTAAAACTGTGCTGTAGTTTTTATATAGATTTTTTCATTCAAATTACGTTATCTAAAAAAGTGAAGTGTTTTTATTTAATTTATAAGAGATAATTTGTGGGAAATTAGCTCTCATAAAAAACGAGCATGTATATTGCCACTTCAAAGGATTTGCGCTGTTGTTTCTTCGCAATATTTTATATCGTTTTCTAGCTCAAGTCACTTATTAGGCTA

Network for GWHGAAEX005534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16661.4	Lactamase_B_6	22	196	2.50E-56
PF10996.7	Beta-Casp	242	365	2.10E-20
PF07521.11	RMMBL	533	585	6.50E-12
PF13299.5	CPSF100_C	643	734	2.40E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14402	CPSF2, CFT2	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	53.210
SRP064423	SRR2545915	Juvenile tuber	65.370
SRP108465	SRR5643513	five period of Gastrodia elata	52.050
	SRR5643514	five period of Gastrodia elata	61.280
	SRR5643515	five period of Gastrodia elata	53.790
	SRR5643524	five period of Gastrodia elata	59.990
	SRR5643525	five period of Gastrodia elata	33.210
	SRR5643528	five period of Gastrodia elata	35.260
	SRR5643658	five period of Gastrodia elata	38.020
	SRR5643659	five period of Gastrodia elata	44.340
	SRR5643660	five period of Gastrodia elata	48.730
	SRR5643661	five period of Gastrodia elata	43.770
	SRR5643662	five period of Gastrodia elata	50.790
	SRR5643663	five period of Gastrodia elata	46.520
	SRR5643664	five period of Gastrodia elata	48.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	50.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	58.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	63.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	60.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	61.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	75.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	68.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	68.300
SRP279888	Gastro	Gastrodia elata tuber	71.09
	Juven	Juvenile tuber	79.65
	Mother_Gastro	Mother tuber of Gastrodia elata	49.98
	Mother_Juven	Mother tuber of Juvenile	64.58