Detail information of GWHGAAEX005539/evm.TU.scaffold_165.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186686361|ref|YP_001869557.1| | 6.00E-36 | O-methyltransferase family protein [Nostoc punctiforme PCC 73102] |
| KOG | KOG3178 | 1.00E-106 | Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases |
| nr | gi|743776373|ref|XP_010918594.1| | 3.70E-118 | PREDICTED: caffeic acid 3-O-methyltransferase-like [Elaeis guineensis] |
| Swissprot | tr|Q9XGV9|COMT2_OCIBA | 1.00E-111 | Caffeic acid 3-O-methyltransferase 2 |
| trEMBL | tr|A0A076NBT0|A0A076NBT0_VACCO | 5.00E-112 | O-methyltransferase {ECO:0000313|EMBL:AIJ28474.1} |
| TAIR | AT5G54160 | 1.00E-106 | O-methyltransferase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000167 | 2179423 | 2198221 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005539
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08100.10 | Dimerisation | 31 | 83 | 3.80E-13 |
| PF00891.17 | Methyltransf_2 | 131 | 348 | 1.20E-65 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13066 | E2.1.1.68, COMT | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008171 | Molecular Function | O-methyltransferase activity |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0008168 | Molecular Function | methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 231.850 |
| SRR2545915 | Juvenile tuber | 95.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 73.460 |
| SRR5643514 | five period of Gastrodia elata | 42.180 | |
| SRR5643515 | five period of Gastrodia elata | 53.110 | |
| SRR5643524 | five period of Gastrodia elata | 45.920 | |
| SRR5643525 | five period of Gastrodia elata | 969.170 | |
| SRR5643528 | five period of Gastrodia elata | 433.190 | |
| SRR5643658 | five period of Gastrodia elata | 483.060 | |
| SRR5643659 | five period of Gastrodia elata | 16.580 | |
| SRR5643660 | five period of Gastrodia elata | 20.010 | |
| SRR5643661 | five period of Gastrodia elata | 16.340 | |
| SRR5643662 | five period of Gastrodia elata | 8.620 | |
| SRR5643663 | five period of Gastrodia elata | 6.410 | |
| SRR5643664 | five period of Gastrodia elata | 8.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 541.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 431.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 476.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 821.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1066.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1238.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 691.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 876.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 228.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 258.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 174.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 174.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.98 |
| Juven | Juvenile tuber | 289.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 59.13 | |
| Mother_Juven | Mother tuber of Juvenile | 61.55 |