Detail information of GWHGAAEX005545/evm.TU.scaffold_166.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|114571191|ref|YP_757871.1| | 3.00E-09 | Mg2+ transporter protein, CorA family protein [Maricaulis maris MCS10] |
| nr | gi|672161727|ref|XP_008800691.1| | 0 | PREDICTED: uncharacterized protein LOC103714979 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|M0TAE7|M0TAE7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P26520_001} |
| TAIR | AT1G29820 | 0 | Magnesium transporter CorA-like family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000171 | 63375 | 71643 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005545
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01544.17 | CorA | 360 | 494 | 2.30E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0030001 | Biological Process | metal ion transport |
| GO:0046873 | Molecular Function | metal ion transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.350 |
| SRR2545915 | Juvenile tuber | 1.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.400 |
| SRR5643514 | five period of Gastrodia elata | 7.370 | |
| SRR5643515 | five period of Gastrodia elata | 4.490 | |
| SRR5643524 | five period of Gastrodia elata | 5.770 | |
| SRR5643525 | five period of Gastrodia elata | 23.120 | |
| SRR5643528 | five period of Gastrodia elata | 17.520 | |
| SRR5643658 | five period of Gastrodia elata | 21.690 | |
| SRR5643659 | five period of Gastrodia elata | 0.360 | |
| SRR5643660 | five period of Gastrodia elata | 0.130 | |
| SRR5643661 | five period of Gastrodia elata | 0.130 | |
| SRR5643662 | five period of Gastrodia elata | 0.740 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.50 |
| Juven | Juvenile tuber | 1.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.90 | |
| Mother_Juven | Mother tuber of Juvenile | 4.95 |